Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTPN9P43378 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
PTPN9P43378 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN9P43378 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN9P43378 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN9P43378 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
PTPN9P43378 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN9P43378 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
PTPN9P43378 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
PTPN9P43378 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN9P43378 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC16.17■□□□□ 0.18
PTPN9P43378 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN9P43378 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
PTPN9P43378 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN9P43378 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN9P43378 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.17■□□□□ 0.18
PTPN9P43378 MIR661-201ENST00000384842 89 ntBASIC16.17■□□□□ 0.18
PTPN9P43378 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN9P43378 OSM-203ENST00000403463 464 ntTSL 3 BASIC16.17■□□□□ 0.18
PTPN9P43378 SUN1-204ENST00000403868 978 ntTSL 2 BASIC16.17■□□□□ 0.18
PTPN9P43378 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.17■□□□□ 0.18
PTPN9P43378 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
PTPN9P43378 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC16.17■□□□□ 0.18
PTPN9P43378 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
PTPN9P43378 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.17■□□□□ 0.18
PTPN9P43378 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC16.17■□□□□ 0.18
PTPN9P43378 AC055876.2-201ENST00000531834 546 ntBASIC16.17■□□□□ 0.18
PTPN9P43378 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC16.17■□□□□ 0.18
PTPN9P43378 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN9P43378 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.17■□□□□ 0.18
PTPN9P43378 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC16.17■□□□□ 0.18
PTPN9P43378 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC16.17■□□□□ 0.18
PTPN9P43378 PARN-202ENST00000420015 2360 ntTSL 2 BASIC16.17■□□□□ 0.18
PTPN9P43378 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC16.17■□□□□ 0.18
PTPN9P43378 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC16.17■□□□□ 0.18
PTPN9P43378 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.17■□□□□ 0.18
PTPN9P43378 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC16.17■□□□□ 0.18
PTPN9P43378 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN9P43378 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.17■□□□□ 0.18
PTPN9P43378 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.17■□□□□ 0.18
PTPN9P43378 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.17■□□□□ 0.18
PTPN9P43378 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN9P43378 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC16.17■□□□□ 0.18
PTPN9P43378 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTPN9P43378 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC16.17■□□□□ 0.18
PTPN9P43378 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN9P43378 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN9P43378 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN9P43378 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
PTPN9P43378 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN9P43378 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN9P43378 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN9P43378 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN9P43378 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN9P43378 DFFBP1-201ENST00000433250 979 ntBASIC16.16■□□□□ 0.18
PTPN9P43378 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC16.16■□□□□ 0.18
PTPN9P43378 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN9P43378 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC16.16■□□□□ 0.18
PTPN9P43378 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC16.16■□□□□ 0.18
PTPN9P43378 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC16.16■□□□□ 0.18
PTPN9P43378 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC16.16■□□□□ 0.18
PTPN9P43378 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN9P43378 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
PTPN9P43378 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN9P43378 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.16■□□□□ 0.18
PTPN9P43378 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN9P43378 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN9P43378 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN9P43378 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.16■□□□□ 0.18
PTPN9P43378 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN9P43378 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN9P43378 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN9P43378 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN9P43378 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.16■□□□□ 0.18
PTPN9P43378 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN9P43378 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTPN9P43378 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN9P43378 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
PTPN9P43378 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN9P43378 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN9P43378 AC144831.1-201ENST00000573312 2656 ntBASIC16.15■□□□□ 0.18
PTPN9P43378 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN9P43378 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN9P43378 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN9P43378 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
PTPN9P43378 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN9P43378 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.15■□□□□ 0.18
PTPN9P43378 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN9P43378 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN9P43378 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN9P43378 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN9P43378 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC16.15■□□□□ 0.18
PTPN9P43378 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC16.15■□□□□ 0.18
PTPN9P43378 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
PTPN9P43378 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
PTPN9P43378 RN7SL204P-201ENST00000582831 262 ntBASIC16.15■□□□□ 0.18
PTPN9P43378 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.15■□□□□ 0.18
PTPN9P43378 LINC02560-201ENST00000596379 459 ntBASIC16.15■□□□□ 0.18
PTPN9P43378 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC16.15■□□□□ 0.18
PTPN9P43378 AL662799.1-202ENST00000614205 422 ntBASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms