Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AL136295.7-201ENST00000619226 1200 ntBASIC14.64□□□□□ -0.07
COL5A1P20908 AL805961.1-203ENST00000641078 1258 ntBASIC14.64□□□□□ -0.07
COL5A1P20908 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC14.64□□□□□ -0.07
COL5A1P20908 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC14.64□□□□□ -0.07
COL5A1P20908 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL5A1P20908 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL5A1P20908 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL5A1P20908 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL5A1P20908 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC14.64□□□□□ -0.07
COL5A1P20908 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
COL5A1P20908 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL5A1P20908 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC14.64□□□□□ -0.07
COL5A1P20908 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL5A1P20908 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL5A1P20908 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
COL5A1P20908 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
COL5A1P20908 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL5A1P20908 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL5A1P20908 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
COL5A1P20908 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.64□□□□□ -0.07
COL5A1P20908 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL5A1P20908 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.64□□□□□ -0.07
COL5A1P20908 AL596276.2-201ENST00000447525 331 ntBASIC14.64□□□□□ -0.07
COL5A1P20908 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC14.64□□□□□ -0.07
COL5A1P20908 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL5A1P20908 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC14.64□□□□□ -0.07
COL5A1P20908 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC14.64□□□□□ -0.07
COL5A1P20908 AC004466.1-201ENST00000599515 1080 ntBASIC14.64□□□□□ -0.07
COL5A1P20908 AC090164.2-201ENST00000611487 516 ntBASIC14.64□□□□□ -0.07
COL5A1P20908 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
COL5A1P20908 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL5A1P20908 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL5A1P20908 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.64□□□□□ -0.07
COL5A1P20908 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC14.64□□□□□ -0.07
COL5A1P20908 AC009090.5-201ENST00000624886 2285 ntBASIC14.64□□□□□ -0.07
COL5A1P20908 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL5A1P20908 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL5A1P20908 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC14.63□□□□□ -0.07
COL5A1P20908 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC14.63□□□□□ -0.07
COL5A1P20908 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL5A1P20908 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL5A1P20908 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL5A1P20908 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
COL5A1P20908 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL5A1P20908 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL5A1P20908 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
COL5A1P20908 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
COL5A1P20908 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL5A1P20908 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL5A1P20908 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL5A1P20908 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC14.63□□□□□ -0.07
COL5A1P20908 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC14.63□□□□□ -0.07
COL5A1P20908 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
COL5A1P20908 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.63□□□□□ -0.07
COL5A1P20908 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC14.63□□□□□ -0.07
COL5A1P20908 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL5A1P20908 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL5A1P20908 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL5A1P20908 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL5A1P20908 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL5A1P20908 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
COL5A1P20908 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL5A1P20908 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL5A1P20908 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC14.62□□□□□ -0.07
COL5A1P20908 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC14.62□□□□□ -0.07
COL5A1P20908 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC14.62□□□□□ -0.07
COL5A1P20908 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC14.62□□□□□ -0.07
COL5A1P20908 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC14.62□□□□□ -0.07
COL5A1P20908 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.62□□□□□ -0.07
COL5A1P20908 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC14.62□□□□□ -0.07
COL5A1P20908 PRKXP1-201ENST00000561423 1122 ntBASIC14.62□□□□□ -0.07
COL5A1P20908 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL5A1P20908 AP005117.1-202ENST00000581724 1908 ntBASIC14.62□□□□□ -0.07
COL5A1P20908 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.62□□□□□ -0.07
COL5A1P20908 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC14.62□□□□□ -0.07
COL5A1P20908 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL5A1P20908 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL5A1P20908 AC007950.2-201ENST00000615045 2347 ntBASIC14.62□□□□□ -0.07
COL5A1P20908 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL5A1P20908 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
COL5A1P20908 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL5A1P20908 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL5A1P20908 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL5A1P20908 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.62□□□□□ -0.07
COL5A1P20908 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL5A1P20908 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.62□□□□□ -0.07
COL5A1P20908 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC14.62□□□□□ -0.07
COL5A1P20908 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC14.62□□□□□ -0.07
COL5A1P20908 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
COL5A1P20908 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL5A1P20908 AC018695.7-201ENST00000624587 2492 ntBASIC14.62□□□□□ -0.07
COL5A1P20908 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL5A1P20908 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC14.62□□□□□ -0.07
COL5A1P20908 AC010141.1-201ENST00000411585 623 ntBASIC14.62□□□□□ -0.07
COL5A1P20908 Z97180.1-201ENST00000445173 988 ntBASIC14.62□□□□□ -0.07
COL5A1P20908 AC008267.1-201ENST00000474858 1069 ntBASIC14.62□□□□□ -0.07
COL5A1P20908 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL5A1P20908 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC14.62□□□□□ -0.07
COL5A1P20908 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC14.62□□□□□ -0.07
COL5A1P20908 AC132192.2-201ENST00000596206 1147 ntBASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms