Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC12.63□□□□□ -0.39
HMGB3O15347 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC12.63□□□□□ -0.39
HMGB3O15347 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HMGB3O15347 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
HMGB3O15347 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HMGB3O15347 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC12.63□□□□□ -0.39
HMGB3O15347 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC12.63□□□□□ -0.39
HMGB3O15347 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
HMGB3O15347 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC12.63□□□□□ -0.39
HMGB3O15347 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HMGB3O15347 ARMC10P1-201ENST00000313754 855 ntBASIC12.63□□□□□ -0.39
HMGB3O15347 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HMGB3O15347 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HMGB3O15347 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HMGB3O15347 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HMGB3O15347 PTCHD3P3-201ENST00000403073 906 ntBASIC12.63□□□□□ -0.39
HMGB3O15347 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC12.63□□□□□ -0.39
HMGB3O15347 IGHV3-47-201ENST00000425060 335 ntBASIC12.63□□□□□ -0.39
HMGB3O15347 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC12.63□□□□□ -0.39
HMGB3O15347 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
HMGB3O15347 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC12.63□□□□□ -0.39
HMGB3O15347 PRYP5-201ENST00000451909 266 ntBASIC12.63□□□□□ -0.39
HMGB3O15347 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HMGB3O15347 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HMGB3O15347 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC12.63□□□□□ -0.39
HMGB3O15347 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
HMGB3O15347 AC107918.2-201ENST00000530817 355 ntBASIC12.63□□□□□ -0.39
HMGB3O15347 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC12.63□□□□□ -0.39
HMGB3O15347 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC12.63□□□□□ -0.39
HMGB3O15347 CIB2-208ENST00000560618 804 ntTSL 2 BASIC12.63□□□□□ -0.39
HMGB3O15347 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC12.63□□□□□ -0.39
HMGB3O15347 TPSP2-201ENST00000561760 610 ntBASIC12.63□□□□□ -0.39
HMGB3O15347 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC12.63□□□□□ -0.39
HMGB3O15347 AL136038.3-201ENST00000561909 1096 ntBASIC12.63□□□□□ -0.39
HMGB3O15347 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
HMGB3O15347 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC12.63□□□□□ -0.39
HMGB3O15347 AL022326.1-202ENST00000641533 845 ntBASIC12.63□□□□□ -0.39
HMGB3O15347 ACACB-202ENST00000377848 9247 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HMGB3O15347 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
HMGB3O15347 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HMGB3O15347 ATE1-208ENST00000540606 5165 ntTSL 2 BASIC12.63□□□□□ -0.39
HMGB3O15347 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HMGB3O15347 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HMGB3O15347 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HMGB3O15347 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
HMGB3O15347 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
HMGB3O15347 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HMGB3O15347 GOLGA3-202ENST00000450791 8870 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
HMGB3O15347 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
HMGB3O15347 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HMGB3O15347 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC12.63□□□□□ -0.39
HMGB3O15347 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC12.63□□□□□ -0.39
HMGB3O15347 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HMGB3O15347 FGD5P1-202ENST00000614866 2498 ntBASIC12.63□□□□□ -0.39
HMGB3O15347 DSP-202ENST00000418664 7812 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
HMGB3O15347 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC12.63□□□□□ -0.39
HMGB3O15347 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC12.63□□□□□ -0.39
HMGB3O15347 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 ACACB-201ENST00000338432 9360 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC12.62□□□□□ -0.39
HMGB3O15347 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
HMGB3O15347 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 MTUS2-206ENST00000612955 7430 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
HMGB3O15347 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC12.62□□□□□ -0.39
HMGB3O15347 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
HMGB3O15347 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC12.62□□□□□ -0.39
HMGB3O15347 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC12.62□□□□□ -0.39
HMGB3O15347 CABIN1-201ENST00000263119 7222 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC12.62□□□□□ -0.39
HMGB3O15347 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 AP000347.1-201ENST00000417194 5004 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC12.62□□□□□ -0.39
HMGB3O15347 NUS1P2-201ENST00000417358 873 ntBASIC12.62□□□□□ -0.39
HMGB3O15347 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC12.62□□□□□ -0.39
HMGB3O15347 RBM42-202ENST00000586618 771 ntTSL 3 BASIC12.62□□□□□ -0.39
HMGB3O15347 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC12.62□□□□□ -0.39
HMGB3O15347 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 LINC01023-201ENST00000606054 436 ntBASIC12.62□□□□□ -0.39
HMGB3O15347 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
HMGB3O15347 AF228730.7-201ENST00000641842 219 ntBASIC12.62□□□□□ -0.39
HMGB3O15347 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
HMGB3O15347 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
HMGB3O15347 R3HDM2P2-201ENST00000401880 2116 ntBASIC12.62□□□□□ -0.39
HMGB3O15347 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
HMGB3O15347 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC12.62□□□□□ -0.39
HMGB3O15347 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC12.62□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms