Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC19.64■□□□□ 0.73
NPHP1O15259 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP1O15259 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP1O15259 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP1O15259 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC19.64■□□□□ 0.73
NPHP1O15259 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP1O15259 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
NPHP1O15259 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC19.64■□□□□ 0.73
NPHP1O15259 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC19.64■□□□□ 0.73
NPHP1O15259 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP1O15259 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP1O15259 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP1O15259 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
NPHP1O15259 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
NPHP1O15259 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC19.64■□□□□ 0.73
NPHP1O15259 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP1O15259 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC19.63■□□□□ 0.73
NPHP1O15259 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP1O15259 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP1O15259 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP1O15259 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC19.63■□□□□ 0.73
NPHP1O15259 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP1O15259 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC19.63■□□□□ 0.73
NPHP1O15259 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
NPHP1O15259 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
NPHP1O15259 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP1O15259 DRD5P1-201ENST00000456605 1438 ntBASIC19.63■□□□□ 0.73
NPHP1O15259 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC19.63■□□□□ 0.73
NPHP1O15259 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP1O15259 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP1O15259 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC19.63■□□□□ 0.73
NPHP1O15259 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC19.63■□□□□ 0.73
NPHP1O15259 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP1O15259 TEX30-203ENST00000376022 828 ntTSL 2 BASIC19.63■□□□□ 0.73
NPHP1O15259 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP1O15259 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP1O15259 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC19.63■□□□□ 0.73
NPHP1O15259 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC19.63■□□□□ 0.73
NPHP1O15259 C2orf69P2-201ENST00000562032 1123 ntBASIC19.63■□□□□ 0.73
NPHP1O15259 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC19.63■□□□□ 0.73
NPHP1O15259 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC19.63■□□□□ 0.73
NPHP1O15259 GNRHR2-203ENST00000581100 1187 ntBASIC19.63■□□□□ 0.73
NPHP1O15259 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP1O15259 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
NPHP1O15259 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP1O15259 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP1O15259 AC092171.3-201ENST00000610122 2651 ntBASIC19.63■□□□□ 0.73
NPHP1O15259 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC19.63■□□□□ 0.73
NPHP1O15259 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP1O15259 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP1O15259 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP1O15259 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP1O15259 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP1O15259 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
NPHP1O15259 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP1O15259 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP1O15259 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP1O15259 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC19.62■□□□□ 0.73
NPHP1O15259 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP1O15259 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC19.62■□□□□ 0.73
NPHP1O15259 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP1O15259 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP1O15259 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP1O15259 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP1O15259 AGER-203ENST00000375065 665 ntTSL 2 BASIC19.62■□□□□ 0.73
NPHP1O15259 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP1O15259 BTBD6P1-201ENST00000412176 1267 ntBASIC19.62■□□□□ 0.73
NPHP1O15259 FAM197Y7-201ENST00000432892 766 ntBASIC19.62■□□□□ 0.73
NPHP1O15259 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP1O15259 FAM86HP-204ENST00000513466 959 ntBASIC19.62■□□□□ 0.73
NPHP1O15259 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
NPHP1O15259 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC19.62■□□□□ 0.73
NPHP1O15259 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
NPHP1O15259 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC19.62■□□□□ 0.73
NPHP1O15259 MIR4741-201ENST00000579822 90 ntBASIC19.62■□□□□ 0.73
NPHP1O15259 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC19.62■□□□□ 0.73
NPHP1O15259 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC19.62■□□□□ 0.73
NPHP1O15259 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC19.62■□□□□ 0.73
NPHP1O15259 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP1O15259 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP1O15259 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC19.62■□□□□ 0.73
NPHP1O15259 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
NPHP1O15259 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP1O15259 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
NPHP1O15259 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP1O15259 HYMAI-201ENST00000635591 3347 ntBASIC19.62■□□□□ 0.73
NPHP1O15259 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC19.62■□□□□ 0.73
NPHP1O15259 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP1O15259 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC19.62■□□□□ 0.73
NPHP1O15259 OS9-205ENST00000413095 1660 ntTSL 2 BASIC19.62■□□□□ 0.73
NPHP1O15259 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
NPHP1O15259 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
NPHP1O15259 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
NPHP1O15259 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP1O15259 AGER-206ENST00000375070 1463 ntTSL 5 BASIC19.61■□□□□ 0.73
NPHP1O15259 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP1O15259 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
NPHP1O15259 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP1O15259 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC19.61■□□□□ 0.73
NPHP1O15259 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms