Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 OR8S1-201ENST00000310194 1080 ntBASIC16.42■□□□□ 0.22
CDH9Q9ULB4 MGST3-203ENST00000367885 680 ntTSL 2 BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 NME2-201ENST00000393183 568 ntTSL 2 BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 AC093433.1-201ENST00000458048 571 ntBASIC16.42■□□□□ 0.22
CDH9Q9ULB4 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 AC068587.3-201ENST00000526613 355 ntBASIC16.42■□□□□ 0.22
CDH9Q9ULB4 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 AC233724.13-201ENST00000598383 410 ntBASIC16.42■□□□□ 0.22
CDH9Q9ULB4 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH9Q9ULB4 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 BAATP1-201ENST00000412284 1225 ntBASIC16.41■□□□□ 0.22
CDH9Q9ULB4 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 KRT17P8-201ENST00000540749 863 ntBASIC16.41■□□□□ 0.22
CDH9Q9ULB4 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 ATF5-205ENST00000600336 682 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 BX539320.1-201ENST00000623759 877 ntBASIC16.41■□□□□ 0.22
CDH9Q9ULB4 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 AC020658.6-201ENST00000623564 1870 ntBASIC16.41■□□□□ 0.22
CDH9Q9ULB4 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
CDH9Q9ULB4 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 AC079776.1-201ENST00000401540 1152 ntBASIC16.4■□□□□ 0.22
CDH9Q9ULB4 PGF-202ENST00000405431 666 ntTSL 5 BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC16.4■□□□□ 0.22
CDH9Q9ULB4 AC112492.5-201ENST00000421897 457 ntBASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms