Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
MMP28Q9H239 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
MMP28Q9H239 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC13.89□□□□□ -0.19
MMP28Q9H239 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC13.89□□□□□ -0.19
MMP28Q9H239 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MMP28Q9H239 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC13.89□□□□□ -0.19
MMP28Q9H239 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MMP28Q9H239 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MMP28Q9H239 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MMP28Q9H239 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
MMP28Q9H239 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC13.89□□□□□ -0.19
MMP28Q9H239 KRT18P13-201ENST00000400056 1290 ntBASIC13.89□□□□□ -0.19
MMP28Q9H239 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
MMP28Q9H239 PAWRP1-201ENST00000451083 565 ntBASIC13.89□□□□□ -0.19
MMP28Q9H239 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC13.89□□□□□ -0.19
MMP28Q9H239 RPS15P9-201ENST00000494093 319 ntBASIC13.89□□□□□ -0.19
MMP28Q9H239 KRT18P58-201ENST00000527480 1120 ntBASIC13.89□□□□□ -0.19
MMP28Q9H239 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC13.89□□□□□ -0.19
MMP28Q9H239 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
MMP28Q9H239 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC13.89□□□□□ -0.19
MMP28Q9H239 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC13.89□□□□□ -0.19
MMP28Q9H239 PRKN-208ENST00000610470 531 ntTSL 2 BASIC13.89□□□□□ -0.19
MMP28Q9H239 PRKN-209ENST00000612485 225 ntTSL 5 BASIC13.89□□□□□ -0.19
MMP28Q9H239 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
MMP28Q9H239 GGTLC5P-201ENST00000617623 998 ntBASIC13.89□□□□□ -0.19
MMP28Q9H239 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC13.89□□□□□ -0.19
MMP28Q9H239 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
MMP28Q9H239 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MMP28Q9H239 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC13.89□□□□□ -0.19
MMP28Q9H239 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC13.89□□□□□ -0.19
MMP28Q9H239 BX640514.1-201ENST00000583223 1918 ntBASIC13.89□□□□□ -0.19
MMP28Q9H239 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
MMP28Q9H239 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
MMP28Q9H239 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MMP28Q9H239 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC13.89□□□□□ -0.19
MMP28Q9H239 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
MMP28Q9H239 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
MMP28Q9H239 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
MMP28Q9H239 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
MMP28Q9H239 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
MMP28Q9H239 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC13.89□□□□□ -0.19
MMP28Q9H239 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC13.89□□□□□ -0.19
MMP28Q9H239 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
MMP28Q9H239 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MMP28Q9H239 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MMP28Q9H239 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MMP28Q9H239 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC13.89□□□□□ -0.19
MMP28Q9H239 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC13.89□□□□□ -0.19
MMP28Q9H239 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
MMP28Q9H239 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
MMP28Q9H239 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
MMP28Q9H239 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MMP28Q9H239 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MMP28Q9H239 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MMP28Q9H239 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MMP28Q9H239 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
MMP28Q9H239 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
MMP28Q9H239 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
MMP28Q9H239 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
MMP28Q9H239 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MMP28Q9H239 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC13.88□□□□□ -0.19
MMP28Q9H239 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
MMP28Q9H239 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC13.88□□□□□ -0.19
MMP28Q9H239 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MMP28Q9H239 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC13.88□□□□□ -0.19
MMP28Q9H239 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MMP28Q9H239 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC13.88□□□□□ -0.19
MMP28Q9H239 KRT8P44-201ENST00000441609 1350 ntBASIC13.88□□□□□ -0.19
MMP28Q9H239 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
MMP28Q9H239 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC13.88□□□□□ -0.19
MMP28Q9H239 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC13.88□□□□□ -0.19
MMP28Q9H239 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC13.88□□□□□ -0.19
MMP28Q9H239 MIR940-201ENST00000401276 94 ntBASIC13.88□□□□□ -0.19
MMP28Q9H239 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC13.88□□□□□ -0.19
MMP28Q9H239 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC13.88□□□□□ -0.19
MMP28Q9H239 POLD2P1-201ENST00000511220 997 ntBASIC13.88□□□□□ -0.19
MMP28Q9H239 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC13.88□□□□□ -0.19
MMP28Q9H239 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC13.88□□□□□ -0.19
MMP28Q9H239 AC012640.2-201ENST00000561606 901 ntBASIC13.88□□□□□ -0.19
MMP28Q9H239 LITAF-211ENST00000572255 516 ntTSL 4 BASIC13.88□□□□□ -0.19
MMP28Q9H239 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC13.88□□□□□ -0.19
MMP28Q9H239 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MMP28Q9H239 MIR7706-201ENST00000613747 67 ntBASIC13.88□□□□□ -0.19
MMP28Q9H239 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC13.88□□□□□ -0.19
MMP28Q9H239 AC139530.3-201ENST00000620344 690 ntBASIC13.88□□□□□ -0.19
MMP28Q9H239 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
MMP28Q9H239 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MMP28Q9H239 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
MMP28Q9H239 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
MMP28Q9H239 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
MMP28Q9H239 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
MMP28Q9H239 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC13.88□□□□□ -0.19
MMP28Q9H239 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
MMP28Q9H239 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MMP28Q9H239 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC13.88□□□□□ -0.19
MMP28Q9H239 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
MMP28Q9H239 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
MMP28Q9H239 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MMP28Q9H239 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
MMP28Q9H239 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms