Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 ACTG1P3-201ENST00000431775 1114 ntBASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 KRT18P64-201ENST00000434946 1219 ntBASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 BNIP3P42-201ENST00000454982 569 ntBASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 BNIP3P29-201ENST00000598302 571 ntBASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 AC011447.5-201ENST00000616168 564 ntBASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 INTS4P2-202ENST00000614726 2019 ntBASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC18.87■□□□□ 0.61
RPAP1Q9BWH6 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 BID-213ENST00000615414 2236 ntTSL 5 BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 RPF1-202ENST00000370656 724 ntTSL 2 BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 APOA1-205ENST00000375329 927 ntTSL 2 BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 HNRNPA1P13-201ENST00000510646 963 ntBASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 APRT-204ENST00000563655 709 ntTSL 5 BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 AL109954.1-202ENST00000564051 2148 ntBASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 AC133539.2-201ENST00000604757 467 ntBASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 RPS24-214ENST00000613865 538 ntTSL 5 BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC18.86■□□□□ 0.61
RPAP1Q9BWH6 PDIA3P1-201ENST00000471856 1510 ntBASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 MIR4525-201ENST00000580000 75 ntBASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
RPAP1Q9BWH6 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms