Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
NKX3-1Q99801 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX3-1Q99801 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC13.71□□□□□ -0.21
NKX3-1Q99801 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
NKX3-1Q99801 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC13.71□□□□□ -0.21
NKX3-1Q99801 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX3-1Q99801 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
NKX3-1Q99801 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX3-1Q99801 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX3-1Q99801 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX3-1Q99801 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC13.71□□□□□ -0.21
NKX3-1Q99801 SMN2-210ENST00000511812 867 ntTSL 2 BASIC13.71□□□□□ -0.21
NKX3-1Q99801 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC13.71□□□□□ -0.21
NKX3-1Q99801 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC13.71□□□□□ -0.21
NKX3-1Q99801 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC13.71□□□□□ -0.21
NKX3-1Q99801 AC061975.2-201ENST00000581722 295 ntBASIC13.71□□□□□ -0.21
NKX3-1Q99801 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC13.71□□□□□ -0.21
NKX3-1Q99801 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC13.71□□□□□ -0.21
NKX3-1Q99801 AC139530.3-201ENST00000620344 690 ntBASIC13.71□□□□□ -0.21
NKX3-1Q99801 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC13.71□□□□□ -0.21
NKX3-1Q99801 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
NKX3-1Q99801 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX3-1Q99801 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX3-1Q99801 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
NKX3-1Q99801 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
NKX3-1Q99801 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
NKX3-1Q99801 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
NKX3-1Q99801 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
NKX3-1Q99801 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
NKX3-1Q99801 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
NKX3-1Q99801 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
NKX3-1Q99801 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC13.71□□□□□ -0.22
NKX3-1Q99801 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
NKX3-1Q99801 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.22
NKX3-1Q99801 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC13.71□□□□□ -0.22
NKX3-1Q99801 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
NKX3-1Q99801 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
NKX3-1Q99801 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC13.71□□□□□ -0.22
NKX3-1Q99801 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC13.71□□□□□ -0.22
NKX3-1Q99801 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
NKX3-1Q99801 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC13.71□□□□□ -0.22
NKX3-1Q99801 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
NKX3-1Q99801 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC13.7□□□□□ -0.22
NKX3-1Q99801 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC13.7□□□□□ -0.22
NKX3-1Q99801 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX3-1Q99801 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX3-1Q99801 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC13.7□□□□□ -0.22
NKX3-1Q99801 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX3-1Q99801 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX3-1Q99801 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
NKX3-1Q99801 STK33-217ENST00000534493 1895 ntTSL 2 BASIC13.7□□□□□ -0.22
NKX3-1Q99801 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC13.7□□□□□ -0.22
NKX3-1Q99801 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC13.7□□□□□ -0.22
NKX3-1Q99801 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX3-1Q99801 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
NKX3-1Q99801 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
NKX3-1Q99801 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NKX3-1Q99801 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX3-1Q99801 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC13.7□□□□□ -0.22
NKX3-1Q99801 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC13.7□□□□□ -0.22
NKX3-1Q99801 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NKX3-1Q99801 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NKX3-1Q99801 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC13.7□□□□□ -0.22
NKX3-1Q99801 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC13.7□□□□□ -0.22
NKX3-1Q99801 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC13.7□□□□□ -0.22
NKX3-1Q99801 PGAM5P1-201ENST00000518923 814 ntBASIC13.7□□□□□ -0.22
NKX3-1Q99801 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NKX3-1Q99801 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX3-1Q99801 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX3-1Q99801 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX3-1Q99801 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
NKX3-1Q99801 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC13.7□□□□□ -0.22
NKX3-1Q99801 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
NKX3-1Q99801 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC13.7□□□□□ -0.22
NKX3-1Q99801 AL359258.3-201ENST00000622910 2331 ntBASIC13.7□□□□□ -0.22
NKX3-1Q99801 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
NKX3-1Q99801 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC13.7□□□□□ -0.22
NKX3-1Q99801 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
NKX3-1Q99801 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NKX3-1Q99801 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NKX3-1Q99801 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NKX3-1Q99801 KRT8P44-201ENST00000441609 1350 ntBASIC13.7□□□□□ -0.22
NKX3-1Q99801 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX3-1Q99801 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NKX3-1Q99801 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC13.7□□□□□ -0.22
NKX3-1Q99801 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC13.7□□□□□ -0.22
NKX3-1Q99801 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX3-1Q99801 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX3-1Q99801 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX3-1Q99801 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC13.69□□□□□ -0.22
NKX3-1Q99801 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
NKX3-1Q99801 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC13.69□□□□□ -0.22
NKX3-1Q99801 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC13.69□□□□□ -0.22
NKX3-1Q99801 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC13.69□□□□□ -0.22
NKX3-1Q99801 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX3-1Q99801 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
NKX3-1Q99801 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX3-1Q99801 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX3-1Q99801 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX3-1Q99801 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms