Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 ABL2-207ENST00000507173 3177 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 PLCB3-201ENST00000279230 4197 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 STARD13-205ENST00000439831 945 ntTSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AL391069.4-201ENST00000609583 481 ntBASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AL158212.4-201ENST00000624062 1286 ntBASIC4.87□□□□□ -1.63
SYNE1Q8NF91 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 DGKZ-204ENST00000454345 4086 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 PML-207ENST00000435786 3643 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 SPDYE17-201ENST00000412399 783 ntBASIC4.87□□□□□ -1.63
SYNE1Q8NF91 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AC245100.3-201ENST00000441281 285 ntBASIC4.87□□□□□ -1.63
SYNE1Q8NF91 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AC061975.2-201ENST00000581722 295 ntBASIC4.87□□□□□ -1.63
SYNE1Q8NF91 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 AC091271.1-201ENST00000611877 1162 ntBASIC4.87□□□□□ -1.63
SYNE1Q8NF91 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 DPP8-204ENST00000358939 2822 ntTSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SYNE1Q8NF91 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC4.86□□□□□ -1.63
SYNE1Q8NF91 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 MPV17-208ENST00000405076 603 ntTSL 5 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 RN7SL752P-201ENST00000463779 287 ntBASIC4.86□□□□□ -1.63
SYNE1Q8NF91 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 FHL2-212ENST00000607522 759 ntTSL 2 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 AC106881.1-201ENST00000605849 3329 ntBASIC4.86□□□□□ -1.63
SYNE1Q8NF91 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 HERC5-201ENST00000264350 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SYNE1Q8NF91 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms