Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 AC138969.2-201ENST00000532739 9932 ntBASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 AP006288.1-201ENST00000446065 395 ntBASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 URGCP-206ENST00000446958 365 ntTSL 2 BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 AC093724.1-201ENST00000448659 1027 ntBASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 YBX1P5-201ENST00000509441 847 ntBASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 AL596442.2-201ENST00000610240 980 ntBASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 WASH6P-202ENST00000359512 1437 ntBASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC14.65□□□□□ -0.06
DEPDC4Q8N2C3 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
DEPDC4Q8N2C3 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 CYP51A1P2-201ENST00000419457 1499 ntBASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 GSN-215ENST00000545652 2428 ntTSL 2 BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 AC091951.1-201ENST00000512854 2465 ntBASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 RNU1-129P-201ENST00000384064 167 ntBASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 PMS2P4-201ENST00000412466 1052 ntBASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 DNAJB3-202ENST00000449667 1266 ntBASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 U1.21-201ENST00000580816 167 ntBASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 MIR4515-201ENST00000584082 81 ntBASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 ACTL9-202ENST00000612068 1252 ntBASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
DEPDC4Q8N2C3 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms