Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
BEST3Q8N1M1 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 AC018892.3-201ENST00000623986 2499 ntBASIC14.54□□□□□ -0.08
BEST3Q8N1M1 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 DBET-201ENST00000630918 3363 ntBASIC14.54□□□□□ -0.08
BEST3Q8N1M1 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 NOP2-220ENST00000545915 630 ntTSL 2 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 AL008721.1-201ENST00000609964 604 ntBASIC14.54□□□□□ -0.08
BEST3Q8N1M1 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 AL033527.5-201ENST00000641382 801 ntBASIC14.54□□□□□ -0.08
BEST3Q8N1M1 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 AL596087.1-201ENST00000400979 1969 ntBASIC14.54□□□□□ -0.08
BEST3Q8N1M1 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 AC007326.2-201ENST00000624224 7579 ntBASIC14.54□□□□□ -0.08
BEST3Q8N1M1 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
BEST3Q8N1M1 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 AL607033.1-201ENST00000623900 1599 ntBASIC14.53□□□□□ -0.08
BEST3Q8N1M1 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 MXI1-205ENST00000393134 889 ntTSL 2 BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 HILS1-202ENST00000545329 423 ntBASIC14.53□□□□□ -0.08
BEST3Q8N1M1 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC14.53□□□□□ -0.08
BEST3Q8N1M1 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms