Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHROOM1Q2M3G4 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHROOM1Q2M3G4 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
SHROOM1Q2M3G4 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHROOM1Q2M3G4 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHROOM1Q2M3G4 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHROOM1Q2M3G4 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
SHROOM1Q2M3G4 GPAA1P2-201ENST00000417923 928 ntBASIC18.04■□□□□ 0.48
SHROOM1Q2M3G4 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHROOM1Q2M3G4 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
SHROOM1Q2M3G4 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC18.04■□□□□ 0.48
SHROOM1Q2M3G4 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
SHROOM1Q2M3G4 AC006453.4-201ENST00000636949 1252 ntBASIC18.04■□□□□ 0.48
SHROOM1Q2M3G4 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHROOM1Q2M3G4 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC18.04■□□□□ 0.48
SHROOM1Q2M3G4 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SHROOM1Q2M3G4 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHROOM1Q2M3G4 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHROOM1Q2M3G4 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
SHROOM1Q2M3G4 AL359258.3-201ENST00000622910 2331 ntBASIC18.04■□□□□ 0.48
SHROOM1Q2M3G4 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
SHROOM1Q2M3G4 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 AC018735.1-201ENST00000437208 1502 ntBASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 BCYRN1-201ENST00000418539 200 ntBASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 AP003171.2-201ENST00000528208 925 ntBASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 AC023310.1-201ENST00000554836 735 ntBASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 AP006547.1-201ENST00000563435 692 ntBASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 AC132938.4-201ENST00000623835 848 ntBASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.03■□□□□ 0.48
SHROOM1Q2M3G4 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 AC104306.2-201ENST00000451877 341 ntBASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 RPSAP36-202ENST00000494591 1261 ntBASIC18.02■□□□□ 0.48
SHROOM1Q2M3G4 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms