Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
NUP98P52948 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
NUP98P52948 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NUP98P52948 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC19■□□□□ 0.63
NUP98P52948 WARS-232ENST00000556645 2508 ntTSL 5 BASIC19■□□□□ 0.63
NUP98P52948 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NUP98P52948 AC010141.1-201ENST00000411585 623 ntBASIC19■□□□□ 0.63
NUP98P52948 ACTG1P2-201ENST00000415776 1125 ntBASIC19■□□□□ 0.63
NUP98P52948 ACTG1P11-201ENST00000425411 1125 ntBASIC19■□□□□ 0.63
NUP98P52948 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC19■□□□□ 0.63
NUP98P52948 IMP3P2-201ENST00000489760 475 ntBASIC19■□□□□ 0.63
NUP98P52948 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC19■□□□□ 0.63
NUP98P52948 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC19■□□□□ 0.63
NUP98P52948 BNIP3P13-201ENST00000599968 566 ntBASIC19■□□□□ 0.63
NUP98P52948 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC19■□□□□ 0.63
NUP98P52948 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC19■□□□□ 0.63
NUP98P52948 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC19■□□□□ 0.63
NUP98P52948 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
NUP98P52948 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
NUP98P52948 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC19■□□□□ 0.63
NUP98P52948 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NUP98P52948 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NUP98P52948 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NUP98P52948 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC19■□□□□ 0.63
NUP98P52948 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC19■□□□□ 0.63
NUP98P52948 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
NUP98P52948 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
NUP98P52948 AC026691.1-201ENST00000602502 2017 ntBASIC19■□□□□ 0.63
NUP98P52948 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NUP98P52948 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19■□□□□ 0.63
NUP98P52948 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NUP98P52948 MIR769-201ENST00000390225 118 ntBASIC19■□□□□ 0.63
NUP98P52948 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC19■□□□□ 0.63
NUP98P52948 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC19■□□□□ 0.63
NUP98P52948 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC19■□□□□ 0.63
NUP98P52948 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC19■□□□□ 0.63
NUP98P52948 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC19■□□□□ 0.63
NUP98P52948 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NUP98P52948 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC19■□□□□ 0.63
NUP98P52948 AL023803.2-201ENST00000620080 638 ntBASIC19■□□□□ 0.63
NUP98P52948 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC19■□□□□ 0.63
NUP98P52948 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
NUP98P52948 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC18.99■□□□□ 0.63
NUP98P52948 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NUP98P52948 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NUP98P52948 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC18.99■□□□□ 0.63
NUP98P52948 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
NUP98P52948 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
NUP98P52948 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
NUP98P52948 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NUP98P52948 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NUP98P52948 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.99■□□□□ 0.63
NUP98P52948 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NUP98P52948 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
NUP98P52948 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NUP98P52948 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC18.99■□□□□ 0.63
NUP98P52948 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC18.99■□□□□ 0.63
NUP98P52948 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NUP98P52948 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NUP98P52948 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
NUP98P52948 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC18.99■□□□□ 0.63
NUP98P52948 AC016629.1-201ENST00000596579 586 ntBASIC18.99■□□□□ 0.63
NUP98P52948 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NUP98P52948 AC112693.3-201ENST00000624819 1983 ntBASIC18.99■□□□□ 0.63
NUP98P52948 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.99■□□□□ 0.63
NUP98P52948 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NUP98P52948 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
NUP98P52948 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NUP98P52948 AC084018.2-201ENST00000613093 2607 ntBASIC18.99■□□□□ 0.63
NUP98P52948 TUBBP5-203ENST00000508529 1334 ntBASIC18.98■□□□□ 0.63
NUP98P52948 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
NUP98P52948 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
NUP98P52948 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC18.98■□□□□ 0.63
NUP98P52948 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NUP98P52948 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
NUP98P52948 AL365203.3-201ENST00000609742 2057 ntBASIC18.98■□□□□ 0.63
NUP98P52948 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
NUP98P52948 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
NUP98P52948 AC092506.1-202ENST00000401022 528 ntBASIC18.98■□□□□ 0.63
NUP98P52948 PDIA3P2-201ENST00000428073 158 ntBASIC18.98■□□□□ 0.63
NUP98P52948 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC18.98■□□□□ 0.63
NUP98P52948 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
NUP98P52948 HLA-J-204ENST00000495278 958 ntBASIC18.98■□□□□ 0.63
NUP98P52948 NUP210P1-202ENST00000504322 710 ntBASIC18.98■□□□□ 0.63
NUP98P52948 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC18.98■□□□□ 0.63
NUP98P52948 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC18.98■□□□□ 0.63
NUP98P52948 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
NUP98P52948 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
NUP98P52948 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC18.98■□□□□ 0.63
NUP98P52948 Z98259.2-201ENST00000641583 609 ntBASIC18.98■□□□□ 0.63
NUP98P52948 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
NUP98P52948 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
NUP98P52948 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
NUP98P52948 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC18.98■□□□□ 0.63
NUP98P52948 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC18.98■□□□□ 0.63
NUP98P52948 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC18.98■□□□□ 0.63
NUP98P52948 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NUP98P52948 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
NUP98P52948 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC18.98■□□□□ 0.63
NUP98P52948 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms