Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HOXA1P49639 C2-206ENST00000442278 2434 ntTSL 2 BASIC13.07□□□□□ -0.32
HOXA1P49639 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HOXA1P49639 FUT8-202ENST00000358307 2664 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
HOXA1P49639 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC13.06□□□□□ -0.32
HOXA1P49639 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC13.06□□□□□ -0.32
HOXA1P49639 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC13.06□□□□□ -0.32
HOXA1P49639 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HOXA1P49639 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
HOXA1P49639 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
HOXA1P49639 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
HOXA1P49639 AC092919.2-201ENST00000623631 1645 ntBASIC13.06□□□□□ -0.32
HOXA1P49639 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HOXA1P49639 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HOXA1P49639 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
HOXA1P49639 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC13.06□□□□□ -0.32
HOXA1P49639 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.06□□□□□ -0.32
HOXA1P49639 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
HOXA1P49639 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC13.06□□□□□ -0.32
HOXA1P49639 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC13.06□□□□□ -0.32
HOXA1P49639 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC13.06□□□□□ -0.32
HOXA1P49639 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC13.06□□□□□ -0.32
HOXA1P49639 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC13.06□□□□□ -0.32
HOXA1P49639 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HOXA1P49639 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HOXA1P49639 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HOXA1P49639 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
HOXA1P49639 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
HOXA1P49639 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
HOXA1P49639 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC13.06□□□□□ -0.32
HOXA1P49639 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HOXA1P49639 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC13.06□□□□□ -0.32
HOXA1P49639 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC13.06□□□□□ -0.32
HOXA1P49639 RNU1-129P-201ENST00000384064 167 ntBASIC13.06□□□□□ -0.32
HOXA1P49639 HAUS4P1-201ENST00000406739 1145 ntBASIC13.06□□□□□ -0.32
HOXA1P49639 ATP6V0CP3-201ENST00000417255 467 ntBASIC13.06□□□□□ -0.32
HOXA1P49639 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
HOXA1P49639 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC13.06□□□□□ -0.32
HOXA1P49639 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC13.06□□□□□ -0.32
HOXA1P49639 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC13.06□□□□□ -0.32
HOXA1P49639 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC13.06□□□□□ -0.32
HOXA1P49639 AF238378.1-201ENST00000526806 358 ntBASIC13.06□□□□□ -0.32
HOXA1P49639 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC13.06□□□□□ -0.32
HOXA1P49639 U1.21-201ENST00000580816 167 ntBASIC13.06□□□□□ -0.32
HOXA1P49639 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC13.06□□□□□ -0.32
HOXA1P49639 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC13.06□□□□□ -0.32
HOXA1P49639 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
HOXA1P49639 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HOXA1P49639 AC008735.5-201ENST00000623544 497 ntBASIC13.06□□□□□ -0.32
HOXA1P49639 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
HOXA1P49639 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC13.06□□□□□ -0.32
HOXA1P49639 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HOXA1P49639 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
HOXA1P49639 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC13.06□□□□□ -0.32
HOXA1P49639 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HOXA1P49639 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HOXA1P49639 CYP4F11-204ENST00000591841 2531 ntTSL 2 BASIC13.06□□□□□ -0.32
HOXA1P49639 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
HOXA1P49639 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
HOXA1P49639 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HOXA1P49639 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
HOXA1P49639 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HOXA1P49639 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HOXA1P49639 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
HOXA1P49639 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC13.05□□□□□ -0.32
HOXA1P49639 ST20-AS1-201ENST00000560255 4223 ntBASIC13.05□□□□□ -0.32
HOXA1P49639 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC13.05□□□□□ -0.32
HOXA1P49639 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HOXA1P49639 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC13.05□□□□□ -0.32
HOXA1P49639 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC13.05□□□□□ -0.32
HOXA1P49639 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
HOXA1P49639 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HOXA1P49639 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HOXA1P49639 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC13.05□□□□□ -0.32
HOXA1P49639 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
HOXA1P49639 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC13.05□□□□□ -0.32
HOXA1P49639 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HOXA1P49639 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HOXA1P49639 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC13.05□□□□□ -0.32
HOXA1P49639 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HOXA1P49639 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HOXA1P49639 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
HOXA1P49639 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC13.05□□□□□ -0.32
HOXA1P49639 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC13.05□□□□□ -0.32
HOXA1P49639 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC13.05□□□□□ -0.32
HOXA1P49639 AC108073.2-201ENST00000464002 357 ntBASIC13.05□□□□□ -0.32
HOXA1P49639 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC13.05□□□□□ -0.32
HOXA1P49639 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC13.05□□□□□ -0.32
HOXA1P49639 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC13.05□□□□□ -0.32
HOXA1P49639 AC105339.3-201ENST00000560043 636 ntBASIC13.05□□□□□ -0.32
HOXA1P49639 MIR4751-201ENST00000578027 74 ntBASIC13.05□□□□□ -0.32
HOXA1P49639 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
HOXA1P49639 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
HOXA1P49639 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC13.05□□□□□ -0.32
HOXA1P49639 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
HOXA1P49639 CCR7-201ENST00000246657 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HOXA1P49639 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HOXA1P49639 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HOXA1P49639 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC13.05□□□□□ -0.32
HOXA1P49639 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms