Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
LHX1P48742 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
LHX1P48742 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LHX1P48742 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC16.45■□□□□ 0.22
LHX1P48742 NUS1P3-201ENST00000423502 862 ntBASIC16.45■□□□□ 0.22
LHX1P48742 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC16.45■□□□□ 0.22
LHX1P48742 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC16.45■□□□□ 0.22
LHX1P48742 AC004066.1-201ENST00000502488 802 ntBASIC16.45■□□□□ 0.22
LHX1P48742 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC16.45■□□□□ 0.22
LHX1P48742 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LHX1P48742 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC16.45■□□□□ 0.22
LHX1P48742 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC16.45■□□□□ 0.22
LHX1P48742 ATF5-205ENST00000600336 682 ntTSL 2 BASIC16.45■□□□□ 0.22
LHX1P48742 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC16.45■□□□□ 0.22
LHX1P48742 AP005019.2-201ENST00000615104 511 ntBASIC16.45■□□□□ 0.22
LHX1P48742 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LHX1P48742 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC16.45■□□□□ 0.22
LHX1P48742 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC16.45■□□□□ 0.22
LHX1P48742 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC16.45■□□□□ 0.22
LHX1P48742 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC16.45■□□□□ 0.22
LHX1P48742 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC16.45■□□□□ 0.22
LHX1P48742 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LHX1P48742 AC020658.6-201ENST00000623564 1870 ntBASIC16.45■□□□□ 0.22
LHX1P48742 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LHX1P48742 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LHX1P48742 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LHX1P48742 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
LHX1P48742 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LHX1P48742 NFIC-211ENST00000641145 8399 ntBASIC16.45■□□□□ 0.22
LHX1P48742 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LHX1P48742 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC16.45■□□□□ 0.22
LHX1P48742 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC16.45■□□□□ 0.22
LHX1P48742 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LHX1P48742 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LHX1P48742 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LHX1P48742 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
LHX1P48742 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC16.45■□□□□ 0.22
LHX1P48742 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC16.45■□□□□ 0.22
LHX1P48742 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC16.45■□□□□ 0.22
LHX1P48742 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC16.44■□□□□ 0.22
LHX1P48742 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.44■□□□□ 0.22
LHX1P48742 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LHX1P48742 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LHX1P48742 AL139384.1-201ENST00000612143 3047 ntBASIC16.44■□□□□ 0.22
LHX1P48742 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.44■□□□□ 0.22
LHX1P48742 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LHX1P48742 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LHX1P48742 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC16.44■□□□□ 0.22
LHX1P48742 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
LHX1P48742 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LHX1P48742 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC16.44■□□□□ 0.22
LHX1P48742 AC005229.1-201ENST00000392885 409 ntBASIC16.44■□□□□ 0.22
LHX1P48742 KRT43P-201ENST00000434019 910 ntBASIC16.44■□□□□ 0.22
LHX1P48742 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC16.44■□□□□ 0.22
LHX1P48742 AC012441.1-201ENST00000446669 685 ntBASIC16.44■□□□□ 0.22
LHX1P48742 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC16.44■□□□□ 0.22
LHX1P48742 AC022137.2-201ENST00000503482 481 ntBASIC16.44■□□□□ 0.22
LHX1P48742 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC16.44■□□□□ 0.22
LHX1P48742 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC16.44■□□□□ 0.22
LHX1P48742 RAB43P1-201ENST00000561790 589 ntBASIC16.44■□□□□ 0.22
LHX1P48742 KSR1-207ENST00000578981 748 ntTSL 4 BASIC16.44■□□□□ 0.22
LHX1P48742 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LHX1P48742 AL022328.1-201ENST00000610050 478 ntBASIC16.44■□□□□ 0.22
LHX1P48742 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LHX1P48742 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.44■□□□□ 0.22
LHX1P48742 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LHX1P48742 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.44■□□□□ 0.22
LHX1P48742 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.44■□□□□ 0.22
LHX1P48742 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.44■□□□□ 0.22
LHX1P48742 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
LHX1P48742 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LHX1P48742 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC16.44■□□□□ 0.22
LHX1P48742 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
LHX1P48742 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.44■□□□□ 0.22
LHX1P48742 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LHX1P48742 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LHX1P48742 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
LHX1P48742 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
LHX1P48742 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
LHX1P48742 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.44■□□□□ 0.22
LHX1P48742 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LHX1P48742 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
LHX1P48742 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
LHX1P48742 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC16.43■□□□□ 0.22
LHX1P48742 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.43■□□□□ 0.22
LHX1P48742 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
LHX1P48742 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LHX1P48742 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LHX1P48742 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.22
LHX1P48742 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LHX1P48742 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LHX1P48742 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LHX1P48742 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
LHX1P48742 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LHX1P48742 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LHX1P48742 PGGT1BP2-201ENST00000398621 1028 ntBASIC16.43■□□□□ 0.22
LHX1P48742 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC16.43■□□□□ 0.22
LHX1P48742 AL355864.2-201ENST00000447420 863 ntBASIC16.43■□□□□ 0.22
LHX1P48742 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC16.43■□□□□ 0.22
LHX1P48742 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms