Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC16.06■□□□□ 0.16
TOP3BO95985 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TOP3BO95985 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC16.06■□□□□ 0.16
TOP3BO95985 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TOP3BO95985 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TOP3BO95985 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC16.06■□□□□ 0.16
TOP3BO95985 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.06■□□□□ 0.16
TOP3BO95985 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
TOP3BO95985 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
TOP3BO95985 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TOP3BO95985 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.06■□□□□ 0.16
TOP3BO95985 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.06■□□□□ 0.16
TOP3BO95985 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TOP3BO95985 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.06■□□□□ 0.16
TOP3BO95985 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TOP3BO95985 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.06■□□□□ 0.16
TOP3BO95985 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TOP3BO95985 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TOP3BO95985 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TOP3BO95985 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TOP3BO95985 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TOP3BO95985 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TOP3BO95985 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TOP3BO95985 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
TOP3BO95985 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.05■□□□□ 0.16
TOP3BO95985 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TOP3BO95985 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.05■□□□□ 0.16
TOP3BO95985 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TOP3BO95985 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
TOP3BO95985 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TOP3BO95985 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
TOP3BO95985 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TOP3BO95985 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TOP3BO95985 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
TOP3BO95985 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TOP3BO95985 RPF1-202ENST00000370656 724 ntTSL 2 BASIC16.05■□□□□ 0.16
TOP3BO95985 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
TOP3BO95985 RPL37AP1-201ENST00000412502 279 ntBASIC16.05■□□□□ 0.16
TOP3BO95985 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.05■□□□□ 0.16
TOP3BO95985 BCYRN1-201ENST00000418539 200 ntBASIC16.05■□□□□ 0.16
TOP3BO95985 DFFBP1-201ENST00000433250 979 ntBASIC16.05■□□□□ 0.16
TOP3BO95985 HLA-DPB2-205ENST00000435074 1188 ntBASIC16.05■□□□□ 0.16
TOP3BO95985 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.05■□□□□ 0.16
TOP3BO95985 TTTY23B-201ENST00000442790 549 ntBASIC16.05■□□□□ 0.16
TOP3BO95985 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.05■□□□□ 0.16
TOP3BO95985 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TOP3BO95985 BNIP3P42-201ENST00000454982 569 ntBASIC16.05■□□□□ 0.16
TOP3BO95985 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC16.05■□□□□ 0.16
TOP3BO95985 PARP8-206ENST00000503665 572 ntTSL 4 BASIC16.05■□□□□ 0.16
TOP3BO95985 GLI4-203ENST00000517468 963 ntTSL 5 BASIC16.05■□□□□ 0.16
TOP3BO95985 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
TOP3BO95985 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TOP3BO95985 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
TOP3BO95985 BNIP3P29-201ENST00000598302 571 ntBASIC16.05■□□□□ 0.16
TOP3BO95985 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TOP3BO95985 AC011447.5-201ENST00000616168 564 ntBASIC16.05■□□□□ 0.16
TOP3BO95985 MIR6787-201ENST00000616675 61 ntBASIC16.05■□□□□ 0.16
TOP3BO95985 COX11-210ENST00000639671 696 ntBASIC16.05■□□□□ 0.16
TOP3BO95985 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TOP3BO95985 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TOP3BO95985 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
TOP3BO95985 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TOP3BO95985 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TOP3BO95985 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.05■□□□□ 0.16
TOP3BO95985 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC16.05■□□□□ 0.16
TOP3BO95985 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TOP3BO95985 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
TOP3BO95985 AC018892.3-201ENST00000623986 2499 ntBASIC16.05■□□□□ 0.16
TOP3BO95985 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
TOP3BO95985 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
TOP3BO95985 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TOP3BO95985 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
TOP3BO95985 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
TOP3BO95985 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC16.05■□□□□ 0.16
TOP3BO95985 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TOP3BO95985 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TOP3BO95985 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
TOP3BO95985 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TOP3BO95985 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.05■□□□□ 0.16
TOP3BO95985 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TOP3BO95985 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TOP3BO95985 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TOP3BO95985 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TOP3BO95985 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TOP3BO95985 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TOP3BO95985 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TOP3BO95985 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.04■□□□□ 0.16
TOP3BO95985 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
TOP3BO95985 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TOP3BO95985 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.04■□□□□ 0.16
TOP3BO95985 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TOP3BO95985 AC090616.6-203ENST00000579186 1945 ntBASIC16.04■□□□□ 0.16
TOP3BO95985 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TOP3BO95985 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.04■□□□□ 0.16
TOP3BO95985 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.04■□□□□ 0.16
TOP3BO95985 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TOP3BO95985 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
TOP3BO95985 SPDYE19P-201ENST00000338590 713 ntBASIC16.04■□□□□ 0.16
TOP3BO95985 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.04■□□□□ 0.16
TOP3BO95985 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms