Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC26.01■■□□□ 1.75
CUX2O14529 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC26.01■■□□□ 1.75
CUX2O14529 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
CUX2O14529 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC26.01■■□□□ 1.75
CUX2O14529 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC26.01■■□□□ 1.75
CUX2O14529 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC26■■□□□ 1.75
CUX2O14529 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
CUX2O14529 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC26■■□□□ 1.75
CUX2O14529 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CUX2O14529 ATXN3-201ENST00000340660 1205 ntTSL 1 (best) BASIC26■■□□□ 1.75
CUX2O14529 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
CUX2O14529 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC26■■□□□ 1.75
CUX2O14529 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC26■■□□□ 1.75
CUX2O14529 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC26■■□□□ 1.75
CUX2O14529 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC26■■□□□ 1.75
CUX2O14529 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC26■■□□□ 1.75
CUX2O14529 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CUX2O14529 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC26■■□□□ 1.75
CUX2O14529 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CUX2O14529 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC26■■□□□ 1.75
CUX2O14529 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC26■■□□□ 1.75
CUX2O14529 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC26■■□□□ 1.75
CUX2O14529 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
CUX2O14529 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
CUX2O14529 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CUX2O14529 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
CUX2O14529 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC25.99■■□□□ 1.75
CUX2O14529 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC25.99■■□□□ 1.75
CUX2O14529 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CUX2O14529 FAM58BP-201ENST00000439056 645 ntBASIC25.99■■□□□ 1.75
CUX2O14529 AC084262.1-201ENST00000567818 751 ntBASIC25.99■■□□□ 1.75
CUX2O14529 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC25.99■■□□□ 1.75
CUX2O14529 HMGB1P24-201ENST00000611897 328 ntBASIC25.99■■□□□ 1.75
CUX2O14529 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC25.99■■□□□ 1.75
CUX2O14529 LRRFIP1P1-201ENST00000498774 2246 ntBASIC25.99■■□□□ 1.75
CUX2O14529 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC25.99■■□□□ 1.75
CUX2O14529 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CUX2O14529 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC25.99■■□□□ 1.75
CUX2O14529 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
CUX2O14529 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CUX2O14529 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC25.99■■□□□ 1.75
CUX2O14529 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CUX2O14529 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
CUX2O14529 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC25.99■■□□□ 1.75
CUX2O14529 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC25.98■■□□□ 1.75
CUX2O14529 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC25.98■■□□□ 1.75
CUX2O14529 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CUX2O14529 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC25.98■■□□□ 1.75
CUX2O14529 AC078875.1-201ENST00000431907 724 ntBASIC25.98■■□□□ 1.75
CUX2O14529 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC25.98■■□□□ 1.75
CUX2O14529 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC25.98■■□□□ 1.75
CUX2O14529 ABHD17AP9-201ENST00000561925 548 ntBASIC25.98■■□□□ 1.75
CUX2O14529 HPN-206ENST00000597419 1212 ntTSL 5 BASIC25.98■■□□□ 1.75
CUX2O14529 AL358472.3-201ENST00000608147 415 ntBASIC25.98■■□□□ 1.75
CUX2O14529 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CUX2O14529 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC25.98■■□□□ 1.75
CUX2O14529 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC25.98■■□□□ 1.75
CUX2O14529 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC25.98■■□□□ 1.75
CUX2O14529 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC25.98■■□□□ 1.75
CUX2O14529 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CUX2O14529 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CUX2O14529 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC25.98■■□□□ 1.75
CUX2O14529 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CUX2O14529 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC25.98■■□□□ 1.75
CUX2O14529 AL583805.1-201ENST00000391389 531 ntBASIC25.98■■□□□ 1.75
CUX2O14529 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC25.98■■□□□ 1.75
CUX2O14529 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC25.98■■□□□ 1.75
CUX2O14529 AC023906.1-201ENST00000486386 453 ntBASIC25.98■■□□□ 1.75
CUX2O14529 MRPL22P1-201ENST00000505398 616 ntBASIC25.98■■□□□ 1.75
CUX2O14529 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
CUX2O14529 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC25.98■■□□□ 1.75
CUX2O14529 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC25.98■■□□□ 1.75
CUX2O14529 DUT-207ENST00000559416 635 ntTSL 2 BASIC25.98■■□□□ 1.75
CUX2O14529 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC25.98■■□□□ 1.75
CUX2O14529 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC25.97■■□□□ 1.75
CUX2O14529 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
CUX2O14529 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
CUX2O14529 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC25.97■■□□□ 1.75
CUX2O14529 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC25.97■■□□□ 1.75
CUX2O14529 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC25.97■■□□□ 1.75
CUX2O14529 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC25.97■■□□□ 1.75
CUX2O14529 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC25.97■■□□□ 1.75
CUX2O14529 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
CUX2O14529 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC25.97■■□□□ 1.75
CUX2O14529 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CUX2O14529 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CUX2O14529 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CUX2O14529 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC25.97■■□□□ 1.75
CUX2O14529 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
CUX2O14529 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CUX2O14529 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CUX2O14529 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC25.97■■□□□ 1.75
CUX2O14529 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC25.97■■□□□ 1.75
CUX2O14529 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC25.97■■□□□ 1.75
CUX2O14529 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC25.97■■□□□ 1.75
CUX2O14529 AP000911.2-201ENST00000534330 502 ntBASIC25.97■■□□□ 1.75
CUX2O14529 DBP-202ENST00000593500 712 ntTSL 2 BASIC25.97■■□□□ 1.75
CUX2O14529 CMC2-224ENST00000630396 481 ntTSL 5 BASIC25.97■■□□□ 1.75
CUX2O14529 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
CUX2O14529 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms