Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 CYP4F24P-201ENST00000586049 1580 ntBASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 FOXO1B-201ENST00000504678 1527 ntBASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
UBE2D4Q9Y2X8 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 UCKL1-AS1-201ENST00000623569 3602 ntBASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 AC140479.7-201ENST00000636301 2332 ntBASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 BSG-215ENST00000618006 1329 ntTSL 2 BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 CICP14-201ENST00000629111 2732 ntBASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 AC002056.1-201ENST00000395613 760 ntBASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 AL031284.1-201ENST00000419297 478 ntBASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 EEF1DP4-201ENST00000446006 880 ntBASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 RNA5SP410-201ENST00000516285 106 ntBASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 RNA5SP415-201ENST00000517246 115 ntBASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 KRT19P2-202ENST00000557173 1012 ntBASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 COQ9-214ENST00000567933 882 ntTSL 3 BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 AC068137.2-201ENST00000605408 478 ntBASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 AL031008.1-201ENST00000619963 541 ntBASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 AC116407.3-201ENST00000623905 1129 ntBASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC10.92□□□□□ -0.66
UBE2D4Q9Y2X8 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms