Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC20.24■□□□□ 0.83
USP54Q70EL1 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP54Q70EL1 UFM1-202ENST00000379649 846 ntTSL 4 BASIC20.24■□□□□ 0.83
USP54Q70EL1 AL645933.1-201ENST00000440087 609 ntBASIC20.24■□□□□ 0.83
USP54Q70EL1 CEP164P1-201ENST00000455142 418 ntBASIC20.24■□□□□ 0.83
USP54Q70EL1 TUBB8P8-201ENST00000458717 1058 ntBASIC20.24■□□□□ 0.83
USP54Q70EL1 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC20.24■□□□□ 0.83
USP54Q70EL1 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC20.24■□□□□ 0.83
USP54Q70EL1 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC20.24■□□□□ 0.83
USP54Q70EL1 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC20.24■□□□□ 0.83
USP54Q70EL1 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC20.24■□□□□ 0.83
USP54Q70EL1 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC20.24■□□□□ 0.83
USP54Q70EL1 AC026691.1-201ENST00000602502 2017 ntBASIC20.24■□□□□ 0.83
USP54Q70EL1 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP54Q70EL1 AL391005.1-201ENST00000623953 2435 ntBASIC20.24■□□□□ 0.83
USP54Q70EL1 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USP54Q70EL1 AL137783.1-201ENST00000623494 1896 ntBASIC20.24■□□□□ 0.83
USP54Q70EL1 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
USP54Q70EL1 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC20.24■□□□□ 0.83
USP54Q70EL1 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
USP54Q70EL1 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP54Q70EL1 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP54Q70EL1 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC20.24■□□□□ 0.83
USP54Q70EL1 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP54Q70EL1 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USP54Q70EL1 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP54Q70EL1 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USP54Q70EL1 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP54Q70EL1 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP54Q70EL1 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP54Q70EL1 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP54Q70EL1 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
USP54Q70EL1 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP54Q70EL1 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP54Q70EL1 AK6-201ENST00000380818 1183 ntTSL 2 BASIC20.23■□□□□ 0.83
USP54Q70EL1 GGCT-203ENST00000409144 836 ntTSL 2 BASIC20.23■□□□□ 0.83
USP54Q70EL1 ISCA2P1-201ENST00000425548 448 ntBASIC20.23■□□□□ 0.83
USP54Q70EL1 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USP54Q70EL1 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC20.23■□□□□ 0.83
USP54Q70EL1 AL157407.1-201ENST00000435784 904 ntBASIC20.23■□□□□ 0.83
USP54Q70EL1 AC011742.3-201ENST00000439053 820 ntBASIC20.23■□□□□ 0.83
USP54Q70EL1 SUPT4H1P2-201ENST00000501248 353 ntBASIC20.23■□□□□ 0.83
USP54Q70EL1 GCOM2-201ENST00000509133 1104 ntBASIC20.23■□□□□ 0.83
USP54Q70EL1 AC134698.3-201ENST00000523880 214 ntBASIC20.23■□□□□ 0.83
USP54Q70EL1 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USP54Q70EL1 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
USP54Q70EL1 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC20.23■□□□□ 0.83
USP54Q70EL1 AL133499.1-201ENST00000596207 608 ntBASIC20.23■□□□□ 0.83
USP54Q70EL1 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP54Q70EL1 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP54Q70EL1 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC20.23■□□□□ 0.83
USP54Q70EL1 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC20.23■□□□□ 0.83
USP54Q70EL1 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
USP54Q70EL1 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP54Q70EL1 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP54Q70EL1 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC20.23■□□□□ 0.83
USP54Q70EL1 AC112693.3-201ENST00000624819 1983 ntBASIC20.23■□□□□ 0.83
USP54Q70EL1 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USP54Q70EL1 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
USP54Q70EL1 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USP54Q70EL1 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP54Q70EL1 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP54Q70EL1 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
USP54Q70EL1 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC20.23■□□□□ 0.83
USP54Q70EL1 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
USP54Q70EL1 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USP54Q70EL1 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USP54Q70EL1 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC20.22■□□□□ 0.83
USP54Q70EL1 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC20.22■□□□□ 0.83
USP54Q70EL1 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC20.22■□□□□ 0.83
USP54Q70EL1 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC20.22■□□□□ 0.83
USP54Q70EL1 AC005962.1-201ENST00000584100 773 ntBASIC20.22■□□□□ 0.83
USP54Q70EL1 RPS15-202ENST00000585665 467 ntTSL 3 BASIC20.22■□□□□ 0.83
USP54Q70EL1 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP54Q70EL1 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP54Q70EL1 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP54Q70EL1 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USP54Q70EL1 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC20.22■□□□□ 0.83
USP54Q70EL1 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP54Q70EL1 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP54Q70EL1 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USP54Q70EL1 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
USP54Q70EL1 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC20.22■□□□□ 0.83
USP54Q70EL1 AL365203.3-201ENST00000609742 2057 ntBASIC20.22■□□□□ 0.83
USP54Q70EL1 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP54Q70EL1 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USP54Q70EL1 FAM58BP-201ENST00000439056 645 ntBASIC20.22■□□□□ 0.83
USP54Q70EL1 KLF2P1-201ENST00000447438 1042 ntBASIC20.22■□□□□ 0.83
USP54Q70EL1 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC20.22■□□□□ 0.83
USP54Q70EL1 DUX4L46-201ENST00000566845 751 ntBASIC20.22■□□□□ 0.83
USP54Q70EL1 MIR4754-201ENST00000582477 89 ntBASIC20.22■□□□□ 0.83
USP54Q70EL1 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC20.22■□□□□ 0.83
USP54Q70EL1 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
USP54Q70EL1 AL157813.1-201ENST00000612996 587 ntBASIC20.22■□□□□ 0.83
USP54Q70EL1 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC20.22■□□□□ 0.83
USP54Q70EL1 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP54Q70EL1 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC20.22■□□□□ 0.83
USP54Q70EL1 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USP54Q70EL1 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USP54Q70EL1 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms