Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
COL8A1P27658 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL8A1P27658 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL8A1P27658 AL691432.1-201ENST00000596308 1422 ntBASIC13.64□□□□□ -0.23
COL8A1P27658 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC13.64□□□□□ -0.23
COL8A1P27658 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC13.64□□□□□ -0.23
COL8A1P27658 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC13.63□□□□□ -0.23
COL8A1P27658 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
COL8A1P27658 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC13.63□□□□□ -0.23
COL8A1P27658 AL118508.1-201ENST00000613502 2345 ntBASIC13.63□□□□□ -0.23
COL8A1P27658 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC13.63□□□□□ -0.23
COL8A1P27658 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC13.63□□□□□ -0.23
COL8A1P27658 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC13.63□□□□□ -0.23
COL8A1P27658 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC13.63□□□□□ -0.23
COL8A1P27658 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
COL8A1P27658 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
COL8A1P27658 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
COL8A1P27658 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC13.63□□□□□ -0.23
COL8A1P27658 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
COL8A1P27658 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC13.63□□□□□ -0.23
COL8A1P27658 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC13.63□□□□□ -0.23
COL8A1P27658 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC13.63□□□□□ -0.23
COL8A1P27658 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 AC124947.2-201ENST00000547118 1133 ntBASIC13.63□□□□□ -0.23
COL8A1P27658 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC13.63□□□□□ -0.23
COL8A1P27658 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC13.63□□□□□ -0.23
COL8A1P27658 AC007663.3-201ENST00000609632 465 ntBASIC13.63□□□□□ -0.23
COL8A1P27658 AC091544.8-201ENST00000619490 361 ntBASIC13.63□□□□□ -0.23
COL8A1P27658 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC13.63□□□□□ -0.23
COL8A1P27658 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
COL8A1P27658 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC13.63□□□□□ -0.23
COL8A1P27658 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC13.63□□□□□ -0.23
COL8A1P27658 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
COL8A1P27658 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL8A1P27658 AL138709.1-201ENST00000614840 1693 ntBASIC13.63□□□□□ -0.23
COL8A1P27658 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC13.62□□□□□ -0.23
COL8A1P27658 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC13.62□□□□□ -0.23
COL8A1P27658 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC13.62□□□□□ -0.23
COL8A1P27658 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC13.62□□□□□ -0.23
COL8A1P27658 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC13.62□□□□□ -0.23
COL8A1P27658 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC13.62□□□□□ -0.23
COL8A1P27658 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC13.62□□□□□ -0.23
COL8A1P27658 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC13.62□□□□□ -0.23
COL8A1P27658 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC13.62□□□□□ -0.23
COL8A1P27658 HSPB1P2-201ENST00000448722 546 ntBASIC13.62□□□□□ -0.23
COL8A1P27658 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC13.62□□□□□ -0.23
COL8A1P27658 NUP210P1-202ENST00000504322 710 ntBASIC13.62□□□□□ -0.23
COL8A1P27658 RNA5SP486-201ENST00000515961 83 ntBASIC13.62□□□□□ -0.23
COL8A1P27658 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC13.62□□□□□ -0.23
COL8A1P27658 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms