Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC005324.6-201ENST00000587972 613 ntBASIC14.69□□□□□ -0.06
COL5A1P20908 AC018635.2-201ENST00000608625 364 ntBASIC14.69□□□□□ -0.06
COL5A1P20908 AC068587.8-201ENST00000641239 219 ntBASIC14.69□□□□□ -0.06
COL5A1P20908 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
COL5A1P20908 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC14.68□□□□□ -0.06
COL5A1P20908 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL5A1P20908 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL5A1P20908 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.68□□□□□ -0.06
COL5A1P20908 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.68□□□□□ -0.06
COL5A1P20908 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL5A1P20908 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL5A1P20908 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL5A1P20908 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL5A1P20908 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL5A1P20908 AC010491.1-201ENST00000563101 2797 ntBASIC14.68□□□□□ -0.06
COL5A1P20908 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL5A1P20908 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL5A1P20908 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC14.68□□□□□ -0.06
COL5A1P20908 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
COL5A1P20908 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL5A1P20908 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL5A1P20908 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL5A1P20908 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL5A1P20908 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL5A1P20908 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL5A1P20908 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL5A1P20908 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
COL5A1P20908 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL5A1P20908 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL5A1P20908 IGF1-203ENST00000392904 761 ntTSL 5 BASIC14.68□□□□□ -0.06
COL5A1P20908 HLA-K-203ENST00000430151 1046 ntBASIC14.68□□□□□ -0.06
COL5A1P20908 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC14.68□□□□□ -0.06
COL5A1P20908 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL5A1P20908 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC14.68□□□□□ -0.06
COL5A1P20908 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL5A1P20908 MESTP3-201ENST00000503460 968 ntBASIC14.68□□□□□ -0.06
COL5A1P20908 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.68□□□□□ -0.06
COL5A1P20908 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL5A1P20908 AP000346.4-201ENST00000614827 381 ntBASIC14.68□□□□□ -0.06
COL5A1P20908 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL5A1P20908 AP000593.2-201ENST00000542775 1433 ntBASIC14.68□□□□□ -0.06
COL5A1P20908 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL5A1P20908 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL5A1P20908 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
COL5A1P20908 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 AC055811.4-201ENST00000624039 1754 ntBASIC14.67□□□□□ -0.06
COL5A1P20908 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC14.67□□□□□ -0.06
COL5A1P20908 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.67□□□□□ -0.06
COL5A1P20908 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
COL5A1P20908 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.67□□□□□ -0.06
COL5A1P20908 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC14.67□□□□□ -0.06
COL5A1P20908 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
COL5A1P20908 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 UFM1-202ENST00000379649 846 ntTSL 4 BASIC14.67□□□□□ -0.06
COL5A1P20908 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
COL5A1P20908 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC14.67□□□□□ -0.06
COL5A1P20908 PDIA3P2-201ENST00000428073 158 ntBASIC14.67□□□□□ -0.06
COL5A1P20908 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 AL353637.1-201ENST00000451571 732 ntBASIC14.67□□□□□ -0.06
COL5A1P20908 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC14.67□□□□□ -0.06
COL5A1P20908 AC022616.1-201ENST00000518688 554 ntBASIC14.67□□□□□ -0.06
COL5A1P20908 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC14.67□□□□□ -0.06
COL5A1P20908 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
COL5A1P20908 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC14.67□□□□□ -0.06
COL5A1P20908 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC14.67□□□□□ -0.06
COL5A1P20908 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC14.67□□□□□ -0.06
COL5A1P20908 TKT-202ENST00000423516 2075 ntTSL 2 BASIC14.67□□□□□ -0.06
COL5A1P20908 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
COL5A1P20908 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 PCDHA1-201ENST00000378133 2726 ntBASIC14.67□□□□□ -0.06
COL5A1P20908 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC14.67□□□□□ -0.06
COL5A1P20908 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
COL5A1P20908 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL5A1P20908 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL5A1P20908 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
COL5A1P20908 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL5A1P20908 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL5A1P20908 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 557.4 ms