Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.32■□□□□ 0.04
PCNAP12004 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC15.32■□□□□ 0.04
PCNAP12004 AC027612.4-201ENST00000605371 583 ntBASIC15.32■□□□□ 0.04
PCNAP12004 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PCNAP12004 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PCNAP12004 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
PCNAP12004 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCNAP12004 MYO15B-237ENST00000642007 4893 ntBASIC15.32■□□□□ 0.04
PCNAP12004 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC15.32■□□□□ 0.04
PCNAP12004 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCNAP12004 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCNAP12004 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCNAP12004 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC15.32■□□□□ 0.04
PCNAP12004 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCNAP12004 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCNAP12004 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCNAP12004 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PCNAP12004 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCNAP12004 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCNAP12004 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
PCNAP12004 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.31■□□□□ 0.04
PCNAP12004 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.31■□□□□ 0.04
PCNAP12004 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.31■□□□□ 0.04
PCNAP12004 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
PCNAP12004 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC15.31■□□□□ 0.04
PCNAP12004 AC006486.2-201ENST00000624246 2199 ntBASIC15.31■□□□□ 0.04
PCNAP12004 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC15.31■□□□□ 0.04
PCNAP12004 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 RPS19-201ENST00000221975 500 ntTSL 3 BASIC15.31■□□□□ 0.04
PCNAP12004 HNRNPFP1-201ENST00000391730 1133 ntBASIC15.31■□□□□ 0.04
PCNAP12004 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC15.31■□□□□ 0.04
PCNAP12004 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC15.31■□□□□ 0.04
PCNAP12004 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
PCNAP12004 SPDYE7P-202ENST00000420373 878 ntBASIC15.31■□□□□ 0.04
PCNAP12004 PHKG1P2-201ENST00000457537 863 ntBASIC15.31■□□□□ 0.04
PCNAP12004 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15.31■□□□□ 0.04
PCNAP12004 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.31■□□□□ 0.04
PCNAP12004 BANF1P1-201ENST00000553684 263 ntBASIC15.31■□□□□ 0.04
PCNAP12004 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC15.31■□□□□ 0.04
PCNAP12004 LITAF-210ENST00000571976 548 ntTSL 2 BASIC15.31■□□□□ 0.04
PCNAP12004 LITAF-214ENST00000574703 486 ntTSL 2 BASIC15.31■□□□□ 0.04
PCNAP12004 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
PCNAP12004 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.31■□□□□ 0.04
PCNAP12004 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 LINC00628-201ENST00000628516 1289 ntBASIC15.31■□□□□ 0.04
PCNAP12004 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.31■□□□□ 0.04
PCNAP12004 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 AC079781.4-201ENST00000641908 219 ntBASIC15.31■□□□□ 0.04
PCNAP12004 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.31■□□□□ 0.04
PCNAP12004 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC15.31■□□□□ 0.04
PCNAP12004 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
PCNAP12004 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC15.31■□□□□ 0.04
PCNAP12004 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.31■□□□□ 0.04
PCNAP12004 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.31■□□□□ 0.04
PCNAP12004 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.31■□□□□ 0.04
PCNAP12004 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC15.31■□□□□ 0.04
PCNAP12004 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCNAP12004 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
PCNAP12004 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
PCNAP12004 AL009178.2-201ENST00000597278 2719 ntBASIC15.3■□□□□ 0.04
PCNAP12004 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
PCNAP12004 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC15.3■□□□□ 0.04
PCNAP12004 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCNAP12004 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PCNAP12004 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCNAP12004 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
PCNAP12004 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCNAP12004 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCNAP12004 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PCNAP12004 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCNAP12004 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCNAP12004 GSN-203ENST00000373808 2664 ntTSL 2 BASIC15.3■□□□□ 0.04
PCNAP12004 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.3■□□□□ 0.04
PCNAP12004 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
PCNAP12004 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
PCNAP12004 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.3■□□□□ 0.04
PCNAP12004 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms