Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC18.32■□□□□ 0.52
HLA-DOAP06340 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC18.32■□□□□ 0.52
HLA-DOAP06340 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC18.32■□□□□ 0.52
HLA-DOAP06340 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DOAP06340 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DOAP06340 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DOAP06340 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DOAP06340 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DOAP06340 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DOAP06340 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC18.32■□□□□ 0.52
HLA-DOAP06340 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DOAP06340 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC18.32■□□□□ 0.52
HLA-DOAP06340 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DOAP06340 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.32■□□□□ 0.52
HLA-DOAP06340 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DOAP06340 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC18.31■□□□□ 0.52
HLA-DOAP06340 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC18.31■□□□□ 0.52
HLA-DOAP06340 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
HLA-DOAP06340 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC18.31■□□□□ 0.52
HLA-DOAP06340 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HLA-DOAP06340 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HLA-DOAP06340 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HLA-DOAP06340 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HLA-DOAP06340 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HLA-DOAP06340 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
HLA-DOAP06340 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HLA-DOAP06340 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HLA-DOAP06340 AL118508.1-201ENST00000613502 2345 ntBASIC18.31■□□□□ 0.52
HLA-DOAP06340 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC18.31■□□□□ 0.52
HLA-DOAP06340 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HLA-DOAP06340 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HLA-DOAP06340 GUK1-206ENST00000366723 845 ntTSL 5 BASIC18.31■□□□□ 0.52
HLA-DOAP06340 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HLA-DOAP06340 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC18.31■□□□□ 0.52
HLA-DOAP06340 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HLA-DOAP06340 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HLA-DOAP06340 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC18.31■□□□□ 0.52
HLA-DOAP06340 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC18.31■□□□□ 0.52
HLA-DOAP06340 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC18.31■□□□□ 0.52
HLA-DOAP06340 AC145423.3-201ENST00000615987 467 ntBASIC18.31■□□□□ 0.52
HLA-DOAP06340 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC18.31■□□□□ 0.52
HLA-DOAP06340 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HLA-DOAP06340 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HLA-DOAP06340 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC18.31■□□□□ 0.52
HLA-DOAP06340 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
HLA-DOAP06340 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC18.31■□□□□ 0.52
HLA-DOAP06340 AC010491.1-201ENST00000563101 2797 ntBASIC18.3■□□□□ 0.52
HLA-DOAP06340 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
HLA-DOAP06340 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
HLA-DOAP06340 AC127383.1-201ENST00000444697 1800 ntBASIC18.3■□□□□ 0.52
HLA-DOAP06340 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC18.3■□□□□ 0.52
HLA-DOAP06340 AC084364.1-201ENST00000551967 1556 ntBASIC18.3■□□□□ 0.52
HLA-DOAP06340 TUBB1P2-201ENST00000422712 1306 ntBASIC18.3■□□□□ 0.52
HLA-DOAP06340 TUBB1P1-201ENST00000503144 1300 ntBASIC18.3■□□□□ 0.52
HLA-DOAP06340 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HLA-DOAP06340 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HLA-DOAP06340 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
HLA-DOAP06340 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HLA-DOAP06340 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HLA-DOAP06340 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HLA-DOAP06340 FAM86MP-201ENST00000340703 885 ntBASIC18.3■□□□□ 0.52
HLA-DOAP06340 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HLA-DOAP06340 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HLA-DOAP06340 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC18.3■□□□□ 0.52
HLA-DOAP06340 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
HLA-DOAP06340 AL355994.2-201ENST00000447882 704 ntBASIC18.3■□□□□ 0.52
HLA-DOAP06340 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
HLA-DOAP06340 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HLA-DOAP06340 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC18.3■□□□□ 0.52
HLA-DOAP06340 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC18.3■□□□□ 0.52
HLA-DOAP06340 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC18.3■□□□□ 0.52
HLA-DOAP06340 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC18.3■□□□□ 0.52
HLA-DOAP06340 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC18.3■□□□□ 0.52
HLA-DOAP06340 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC18.3■□□□□ 0.52
HLA-DOAP06340 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC18.3■□□□□ 0.52
HLA-DOAP06340 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC18.3■□□□□ 0.52
HLA-DOAP06340 INO80C-210ENST00000590757 595 ntTSL 2 BASIC18.3■□□□□ 0.52
HLA-DOAP06340 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HLA-DOAP06340 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC18.3■□□□□ 0.52
HLA-DOAP06340 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC18.3■□□□□ 0.52
HLA-DOAP06340 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
HLA-DOAP06340 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
HLA-DOAP06340 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HLA-DOAP06340 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HLA-DOAP06340 AMT-224ENST00000635808 1610 ntTSL 5 BASIC18.3■□□□□ 0.52
HLA-DOAP06340 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HLA-DOAP06340 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC18.3■□□□□ 0.52
HLA-DOAP06340 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HLA-DOAP06340 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HLA-DOAP06340 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
HLA-DOAP06340 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC18.3■□□□□ 0.52
HLA-DOAP06340 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DOAP06340 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DOAP06340 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DOAP06340 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DOAP06340 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
HLA-DOAP06340 AC084018.2-201ENST00000613093 2607 ntBASIC18.29■□□□□ 0.52
HLA-DOAP06340 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DOAP06340 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DOAP06340 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms