Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
SIX3O95343 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
SIX3O95343 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SIX3O95343 AC099063.4-201ENST00000641099 1602 ntBASIC15.32■□□□□ 0.04
SIX3O95343 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SIX3O95343 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SIX3O95343 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SIX3O95343 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SIX3O95343 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SIX3O95343 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SIX3O95343 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SIX3O95343 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SIX3O95343 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
SIX3O95343 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SIX3O95343 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC15.31■□□□□ 0.04
SIX3O95343 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SIX3O95343 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
SIX3O95343 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
SIX3O95343 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC15.31■□□□□ 0.04
SIX3O95343 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SIX3O95343 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
SIX3O95343 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SIX3O95343 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SIX3O95343 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
SIX3O95343 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SIX3O95343 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.31■□□□□ 0.04
SIX3O95343 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SIX3O95343 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.31■□□□□ 0.04
SIX3O95343 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
SIX3O95343 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.31■□□□□ 0.04
SIX3O95343 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC15.31■□□□□ 0.04
SIX3O95343 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SIX3O95343 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.31■□□□□ 0.04
SIX3O95343 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.31■□□□□ 0.04
SIX3O95343 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC15.31■□□□□ 0.04
SIX3O95343 CALM1-205ENST00000553542 877 ntTSL 5 BASIC15.31■□□□□ 0.04
SIX3O95343 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
SIX3O95343 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC15.31■□□□□ 0.04
SIX3O95343 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.31■□□□□ 0.04
SIX3O95343 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SIX3O95343 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SIX3O95343 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SIX3O95343 KRT8P12-202ENST00000472924 1397 ntBASIC15.31■□□□□ 0.04
SIX3O95343 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SIX3O95343 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SIX3O95343 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.31■□□□□ 0.04
SIX3O95343 AMT-224ENST00000635808 1610 ntTSL 5 BASIC15.31■□□□□ 0.04
SIX3O95343 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SIX3O95343 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
SIX3O95343 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC15.31■□□□□ 0.04
SIX3O95343 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
SIX3O95343 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SIX3O95343 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.31■□□□□ 0.04
SIX3O95343 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
SIX3O95343 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SIX3O95343 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SIX3O95343 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.31■□□□□ 0.04
SIX3O95343 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
SIX3O95343 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SIX3O95343 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SIX3O95343 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
SIX3O95343 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SIX3O95343 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SIX3O95343 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
SIX3O95343 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SIX3O95343 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SIX3O95343 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SIX3O95343 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SIX3O95343 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SIX3O95343 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
SIX3O95343 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SIX3O95343 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
SIX3O95343 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC15.3■□□□□ 0.04
SIX3O95343 AC211486.1-202ENST00000416371 468 ntBASIC15.3■□□□□ 0.04
SIX3O95343 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC15.3■□□□□ 0.04
SIX3O95343 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.3■□□□□ 0.04
SIX3O95343 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SIX3O95343 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
SIX3O95343 AL035456.1-201ENST00000456064 1369 ntBASIC15.3■□□□□ 0.04
SIX3O95343 AC211476.1-201ENST00000503899 468 ntBASIC15.3■□□□□ 0.04
SIX3O95343 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SIX3O95343 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.3■□□□□ 0.04
SIX3O95343 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15.3■□□□□ 0.04
SIX3O95343 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SIX3O95343 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC15.3■□□□□ 0.04
SIX3O95343 AC084364.1-201ENST00000551967 1556 ntBASIC15.3■□□□□ 0.04
SIX3O95343 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SIX3O95343 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC15.3■□□□□ 0.04
SIX3O95343 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC15.3■□□□□ 0.04
SIX3O95343 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC15.3■□□□□ 0.04
SIX3O95343 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC15.3■□□□□ 0.04
SIX3O95343 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15.3■□□□□ 0.04
SIX3O95343 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.3■□□□□ 0.04
SIX3O95343 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.3■□□□□ 0.04
SIX3O95343 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
SIX3O95343 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SIX3O95343 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SIX3O95343 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
SIX3O95343 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.3■□□□□ 0.04
SIX3O95343 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms