Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC15.41■□□□□ 0.06
VPS4BO75351 FAM58DP-201ENST00000428076 619 ntBASIC15.41■□□□□ 0.06
VPS4BO75351 CRB3P1-201ENST00000449338 276 ntBASIC15.41■□□□□ 0.06
VPS4BO75351 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC15.41■□□□□ 0.06
VPS4BO75351 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.41■□□□□ 0.06
VPS4BO75351 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.41■□□□□ 0.06
VPS4BO75351 AC105233.2-201ENST00000523697 349 ntBASIC15.41■□□□□ 0.06
VPS4BO75351 AC069120.2-201ENST00000524091 540 ntBASIC15.41■□□□□ 0.06
VPS4BO75351 AF228730.5-201ENST00000530288 346 ntBASIC15.41■□□□□ 0.06
VPS4BO75351 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC15.41■□□□□ 0.06
VPS4BO75351 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC15.41■□□□□ 0.06
VPS4BO75351 RARRES2P8-201ENST00000566335 367 ntBASIC15.41■□□□□ 0.06
VPS4BO75351 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.41■□□□□ 0.06
VPS4BO75351 MIR4313-201ENST00000580760 101 ntBASIC15.41■□□□□ 0.06
VPS4BO75351 AC061975.2-201ENST00000581722 295 ntBASIC15.41■□□□□ 0.06
VPS4BO75351 AL158211.3-201ENST00000607385 239 ntBASIC15.41■□□□□ 0.06
VPS4BO75351 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.41■□□□□ 0.06
VPS4BO75351 REXO1L1P-202ENST00000608646 1974 ntBASIC15.41■□□□□ 0.06
VPS4BO75351 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.41■□□□□ 0.06
VPS4BO75351 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
VPS4BO75351 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
VPS4BO75351 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.41■□□□□ 0.06
VPS4BO75351 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 AKAP8P1-201ENST00000434743 1349 ntBASIC15.41■□□□□ 0.06
VPS4BO75351 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
VPS4BO75351 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS4BO75351 BNIP3P1-202ENST00000550043 1585 ntBASIC15.41■□□□□ 0.06
VPS4BO75351 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS4BO75351 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS4BO75351 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.4■□□□□ 0.06
VPS4BO75351 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS4BO75351 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS4BO75351 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS4BO75351 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS4BO75351 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VPS4BO75351 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS4BO75351 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS4BO75351 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS4BO75351 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC15.4■□□□□ 0.06
VPS4BO75351 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS4BO75351 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC15.4■□□□□ 0.06
VPS4BO75351 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS4BO75351 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VPS4BO75351 UXT-AS1-201ENST00000590504 1525 ntBASIC15.4■□□□□ 0.06
VPS4BO75351 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VPS4BO75351 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VPS4BO75351 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
VPS4BO75351 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC15.4■□□□□ 0.06
VPS4BO75351 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.4■□□□□ 0.06
VPS4BO75351 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.4■□□□□ 0.06
VPS4BO75351 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC15.4■□□□□ 0.06
VPS4BO75351 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC15.4■□□□□ 0.06
VPS4BO75351 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
VPS4BO75351 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.4■□□□□ 0.06
VPS4BO75351 AC243562.1-201ENST00000560672 389 ntBASIC15.4■□□□□ 0.06
VPS4BO75351 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.4■□□□□ 0.06
VPS4BO75351 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS4BO75351 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS4BO75351 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.4■□□□□ 0.06
VPS4BO75351 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS4BO75351 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.4■□□□□ 0.06
VPS4BO75351 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS4BO75351 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.4■□□□□ 0.06
VPS4BO75351 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VPS4BO75351 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS4BO75351 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS4BO75351 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
VPS4BO75351 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.4■□□□□ 0.06
VPS4BO75351 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VPS4BO75351 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS4BO75351 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
VPS4BO75351 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VPS4BO75351 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS4BO75351 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS4BO75351 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.39■□□□□ 0.05
VPS4BO75351 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VPS4BO75351 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS4BO75351 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.39■□□□□ 0.05
VPS4BO75351 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS4BO75351 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS4BO75351 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS4BO75351 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.39■□□□□ 0.05
VPS4BO75351 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS4BO75351 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VPS4BO75351 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS4BO75351 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VPS4BO75351 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC15.39■□□□□ 0.05
VPS4BO75351 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VPS4BO75351 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC15.39■□□□□ 0.05
VPS4BO75351 POR-201ENST00000394893 2532 ntTSL 5 BASIC15.39■□□□□ 0.05
VPS4BO75351 AC127383.1-201ENST00000444697 1800 ntBASIC15.39■□□□□ 0.05
VPS4BO75351 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.39■□□□□ 0.05
VPS4BO75351 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms