Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP2AO43633 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP2AO43633 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.57■□□□□ 0.4
CHMP2AO43633 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP2AO43633 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP2AO43633 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP2AO43633 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP2AO43633 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC17.57■□□□□ 0.4
CHMP2AO43633 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP2AO43633 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
CHMP2AO43633 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CHMP2AO43633 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP2AO43633 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP2AO43633 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
CHMP2AO43633 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP2AO43633 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP2AO43633 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP2AO43633 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP2AO43633 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP2AO43633 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP2AO43633 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP2AO43633 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
CHMP2AO43633 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP2AO43633 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP2AO43633 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP2AO43633 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP2AO43633 AL133267.1-201ENST00000398220 340 ntBASIC17.56■□□□□ 0.4
CHMP2AO43633 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
CHMP2AO43633 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP2AO43633 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
CHMP2AO43633 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP2AO43633 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC17.56■□□□□ 0.4
CHMP2AO43633 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC17.56■□□□□ 0.4
CHMP2AO43633 INE1-201ENST00000456273 945 ntBASIC17.56■□□□□ 0.4
CHMP2AO43633 VDAC1P7-201ENST00000462417 847 ntBASIC17.56■□□□□ 0.4
CHMP2AO43633 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC17.56■□□□□ 0.4
CHMP2AO43633 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC17.56■□□□□ 0.4
CHMP2AO43633 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC17.56■□□□□ 0.4
CHMP2AO43633 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC17.56■□□□□ 0.4
CHMP2AO43633 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
CHMP2AO43633 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC17.56■□□□□ 0.4
CHMP2AO43633 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC17.56■□□□□ 0.4
CHMP2AO43633 TMEM261P1-201ENST00000604899 340 ntBASIC17.56■□□□□ 0.4
CHMP2AO43633 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC17.56■□□□□ 0.4
CHMP2AO43633 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC17.56■□□□□ 0.4
CHMP2AO43633 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP2AO43633 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP2AO43633 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP2AO43633 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP2AO43633 DKFZP434H168-201ENST00000567381 1905 ntBASIC17.56■□□□□ 0.4
CHMP2AO43633 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP2AO43633 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP2AO43633 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC17.56■□□□□ 0.4
CHMP2AO43633 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP2AO43633 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP2AO43633 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP2AO43633 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CHMP2AO43633 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CHMP2AO43633 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP2AO43633 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC17.55■□□□□ 0.4
CHMP2AO43633 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP2AO43633 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
CHMP2AO43633 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP2AO43633 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
CHMP2AO43633 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP2AO43633 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP2AO43633 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CHMP2AO43633 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP2AO43633 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP2AO43633 AC098614.1-201ENST00000368528 745 ntBASIC17.55■□□□□ 0.4
CHMP2AO43633 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC17.55■□□□□ 0.4
CHMP2AO43633 NME2P1-201ENST00000426182 414 ntBASIC17.55■□□□□ 0.4
CHMP2AO43633 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC17.55■□□□□ 0.4
CHMP2AO43633 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC17.55■□□□□ 0.4
CHMP2AO43633 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP2AO43633 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC17.55■□□□□ 0.4
CHMP2AO43633 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC17.55■□□□□ 0.4
CHMP2AO43633 UBL5-208ENST00000593087 320 ntTSL 3 BASIC17.55■□□□□ 0.4
CHMP2AO43633 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
CHMP2AO43633 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.55■□□□□ 0.4
CHMP2AO43633 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP2AO43633 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP2AO43633 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP2AO43633 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP2AO43633 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CHMP2AO43633 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CHMP2AO43633 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
CHMP2AO43633 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP2AO43633 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.55■□□□□ 0.4
CHMP2AO43633 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP2AO43633 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP2AO43633 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP2AO43633 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP2AO43633 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP2AO43633 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP2AO43633 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CHMP2AO43633 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CHMP2AO43633 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CHMP2AO43633 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC17.54■□□□□ 0.4
CHMP2AO43633 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms