Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
HOXC11O43248 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HOXC11O43248 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC11O43248 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC11O43248 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
HOXC11O43248 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC11O43248 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.84■□□□□ 0.13
HOXC11O43248 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC11O43248 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC15.84■□□□□ 0.13
HOXC11O43248 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC15.84■□□□□ 0.13
HOXC11O43248 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC11O43248 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC11O43248 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC11O43248 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC11O43248 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.84■□□□□ 0.13
HOXC11O43248 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC15.84■□□□□ 0.13
HOXC11O43248 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
HOXC11O43248 AC079328.2-201ENST00000561241 3354 ntBASIC15.84■□□□□ 0.13
HOXC11O43248 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC11O43248 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC11O43248 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.84■□□□□ 0.13
HOXC11O43248 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
HOXC11O43248 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC15.84■□□□□ 0.13
HOXC11O43248 PACS1-203ENST00000524815 628 ntTSL 4 BASIC15.84■□□□□ 0.13
HOXC11O43248 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC15.84■□□□□ 0.13
HOXC11O43248 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC15.84■□□□□ 0.13
HOXC11O43248 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC15.84■□□□□ 0.13
HOXC11O43248 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC15.84■□□□□ 0.13
HOXC11O43248 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC15.84■□□□□ 0.13
HOXC11O43248 AC145423.3-201ENST00000615987 467 ntBASIC15.84■□□□□ 0.13
HOXC11O43248 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC11O43248 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC11O43248 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.84■□□□□ 0.13
HOXC11O43248 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.84■□□□□ 0.13
HOXC11O43248 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC15.84■□□□□ 0.13
HOXC11O43248 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.84■□□□□ 0.13
HOXC11O43248 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC11O43248 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.84■□□□□ 0.13
HOXC11O43248 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.84■□□□□ 0.13
HOXC11O43248 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
HOXC11O43248 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.13
HOXC11O43248 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
HOXC11O43248 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC15.83■□□□□ 0.13
HOXC11O43248 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC15.83■□□□□ 0.13
HOXC11O43248 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.83■□□□□ 0.13
HOXC11O43248 AL138709.1-201ENST00000614840 1693 ntBASIC15.83■□□□□ 0.13
HOXC11O43248 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
HOXC11O43248 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC11O43248 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC15.83■□□□□ 0.12
HOXC11O43248 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
HOXC11O43248 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
HOXC11O43248 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC11O43248 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC11O43248 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC11O43248 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC11O43248 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC11O43248 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC11O43248 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC11O43248 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC11O43248 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC15.83■□□□□ 0.12
HOXC11O43248 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
HOXC11O43248 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC15.83■□□□□ 0.12
HOXC11O43248 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC15.83■□□□□ 0.12
HOXC11O43248 NUS1P3-201ENST00000423502 862 ntBASIC15.83■□□□□ 0.12
HOXC11O43248 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC11O43248 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC11O43248 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC15.83■□□□□ 0.12
HOXC11O43248 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC15.83■□□□□ 0.12
HOXC11O43248 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC11O43248 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC11O43248 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC15.83■□□□□ 0.12
HOXC11O43248 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC15.83■□□□□ 0.12
HOXC11O43248 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
HOXC11O43248 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
HOXC11O43248 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.83■□□□□ 0.12
HOXC11O43248 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC15.83■□□□□ 0.12
HOXC11O43248 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC11O43248 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC11O43248 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC11O43248 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15.83■□□□□ 0.12
HOXC11O43248 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC15.83■□□□□ 0.12
HOXC11O43248 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC11O43248 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC11O43248 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC15.83■□□□□ 0.12
HOXC11O43248 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
HOXC11O43248 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC11O43248 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.83■□□□□ 0.12
HOXC11O43248 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC15.83■□□□□ 0.12
HOXC11O43248 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC11O43248 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC11O43248 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.82■□□□□ 0.12
HOXC11O43248 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC11O43248 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.82■□□□□ 0.12
HOXC11O43248 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
HOXC11O43248 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.82■□□□□ 0.12
HOXC11O43248 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.82■□□□□ 0.12
HOXC11O43248 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC11O43248 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC11O43248 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC15.82■□□□□ 0.12
HOXC11O43248 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms