Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC12.71□□□□□ -0.38
FOXA2Q9Y261 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 AC068418.2-201ENST00000577309 3703 ntBASIC12.7□□□□□ -0.38
FOXA2Q9Y261 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 AL139400.1-201ENST00000366220 510 ntBASIC12.7□□□□□ -0.38
FOXA2Q9Y261 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 PON3-203ENST00000427422 894 ntTSL 3 BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 FAM86GP-201ENST00000448322 971 ntBASIC12.7□□□□□ -0.38
FOXA2Q9Y261 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 AC067863.1-201ENST00000494933 530 ntBASIC12.7□□□□□ -0.38
FOXA2Q9Y261 AC109322.1-201ENST00000524499 1264 ntBASIC12.7□□□□□ -0.38
FOXA2Q9Y261 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 AC069262.1-201ENST00000539058 672 ntBASIC12.7□□□□□ -0.38
FOXA2Q9Y261 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 COQ9-214ENST00000567933 882 ntTSL 3 BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
FOXA2Q9Y261 AL035456.1-201ENST00000456064 1369 ntBASIC12.69□□□□□ -0.38
FOXA2Q9Y261 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 AC148477.4-201ENST00000613430 1793 ntBASIC12.69□□□□□ -0.38
FOXA2Q9Y261 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 ELP6-209ENST00000446787 894 ntTSL 3 BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 VPS29-207ENST00000549970 818 ntTSL 3 BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 NAA38-207ENST00000576861 556 ntTSL 3 BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 AC007967.4-201ENST00000614700 386 ntBASIC12.69□□□□□ -0.38
FOXA2Q9Y261 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 AC093028.1-201ENST00000622998 982 ntBASIC12.69□□□□□ -0.38
FOXA2Q9Y261 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
FOXA2Q9Y261 AGAP7P-201ENST00000582299 2062 ntBASIC12.69□□□□□ -0.38
FOXA2Q9Y261 AGAP14-201ENST00000624701 2060 ntBASIC12.69□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms