Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 HNRNPUP1-201ENST00000554987 333 ntBASIC13.92□□□□□ -0.18
SKA3Q8IX90 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC13.92□□□□□ -0.18
SKA3Q8IX90 AC097359.3-201ENST00000603982 1210 ntBASIC13.92□□□□□ -0.18
SKA3Q8IX90 ORC5-208ENST00000626700 344 ntTSL 3 BASIC13.92□□□□□ -0.18
SKA3Q8IX90 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
SKA3Q8IX90 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SKA3Q8IX90 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SKA3Q8IX90 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SKA3Q8IX90 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC13.92□□□□□ -0.18
SKA3Q8IX90 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
SKA3Q8IX90 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC13.91□□□□□ -0.18
SKA3Q8IX90 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
SKA3Q8IX90 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
SKA3Q8IX90 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
SKA3Q8IX90 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC13.91□□□□□ -0.18
SKA3Q8IX90 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC13.91□□□□□ -0.18
SKA3Q8IX90 HNRNPA3P1-201ENST00000401429 1139 ntBASIC13.91□□□□□ -0.18
SKA3Q8IX90 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC13.91□□□□□ -0.18
SKA3Q8IX90 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
SKA3Q8IX90 HNRNPA3P5-201ENST00000455201 833 ntBASIC13.91□□□□□ -0.18
SKA3Q8IX90 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC13.91□□□□□ -0.18
SKA3Q8IX90 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC13.91□□□□□ -0.18
SKA3Q8IX90 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 AL512361.1-201ENST00000554200 418 ntBASIC13.91□□□□□ -0.18
SKA3Q8IX90 AC027796.2-201ENST00000575326 344 ntBASIC13.91□□□□□ -0.18
SKA3Q8IX90 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC13.91□□□□□ -0.18
SKA3Q8IX90 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC13.91□□□□□ -0.18
SKA3Q8IX90 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC13.91□□□□□ -0.18
SKA3Q8IX90 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC13.91□□□□□ -0.18
SKA3Q8IX90 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
SKA3Q8IX90 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC13.91□□□□□ -0.18
SKA3Q8IX90 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SKA3Q8IX90 AC087499.5-201ENST00000452760 1342 ntBASIC13.9□□□□□ -0.18
SKA3Q8IX90 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 GRN-214ENST00000589265 1632 ntTSL 5 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SKA3Q8IX90 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SKA3Q8IX90 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
SKA3Q8IX90 TNRC18P2-201ENST00000417666 2714 ntBASIC13.9□□□□□ -0.18
SKA3Q8IX90 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
SKA3Q8IX90 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SKA3Q8IX90 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SKA3Q8IX90 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 AC136604.1-201ENST00000418535 575 ntBASIC13.9□□□□□ -0.18
SKA3Q8IX90 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 AC241585.1-201ENST00000433527 519 ntBASIC13.9□□□□□ -0.18
SKA3Q8IX90 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 CYMP-203ENST00000474680 1263 ntBASIC13.9□□□□□ -0.18
SKA3Q8IX90 RN7SL618P-201ENST00000477850 296 ntBASIC13.9□□□□□ -0.18
SKA3Q8IX90 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 AL390955.2-201ENST00000603032 514 ntBASIC13.9□□□□□ -0.18
SKA3Q8IX90 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SKA3Q8IX90 AL390754.1-201ENST00000619088 582 ntBASIC13.9□□□□□ -0.18
SKA3Q8IX90 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC13.9□□□□□ -0.18
SKA3Q8IX90 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SKA3Q8IX90 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SKA3Q8IX90 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
SKA3Q8IX90 AL607033.1-201ENST00000623900 1599 ntBASIC13.9□□□□□ -0.18
SKA3Q8IX90 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms