Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN1P58418 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN1P58418 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC14.03□□□□□ -0.16
CLRN1P58418 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CLRN1P58418 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN1P58418 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.03□□□□□ -0.16
CLRN1P58418 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN1P58418 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN1P58418 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN1P58418 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN1P58418 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN1P58418 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
CLRN1P58418 BAD-202ENST00000394531 631 ntTSL 3 BASIC14.03□□□□□ -0.16
CLRN1P58418 AL080243.2-201ENST00000418783 582 ntBASIC14.03□□□□□ -0.16
CLRN1P58418 AL645939.2-201ENST00000427340 991 ntBASIC14.03□□□□□ -0.16
CLRN1P58418 HIST3H2BA-201ENST00000436555 524 ntBASIC14.03□□□□□ -0.16
CLRN1P58418 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC14.03□□□□□ -0.16
CLRN1P58418 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC14.03□□□□□ -0.16
CLRN1P58418 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.03□□□□□ -0.16
CLRN1P58418 AC067863.1-201ENST00000494933 530 ntBASIC14.03□□□□□ -0.16
CLRN1P58418 AC069120.2-201ENST00000524091 540 ntBASIC14.03□□□□□ -0.16
CLRN1P58418 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC14.03□□□□□ -0.16
CLRN1P58418 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC14.03□□□□□ -0.16
CLRN1P58418 BAD-207ENST00000544785 525 ntTSL 3 BASIC14.03□□□□□ -0.16
CLRN1P58418 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC14.03□□□□□ -0.16
CLRN1P58418 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.03□□□□□ -0.16
CLRN1P58418 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
CLRN1P58418 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC14.03□□□□□ -0.16
CLRN1P58418 COQ4-205ENST00000609948 956 ntTSL 2 BASIC14.03□□□□□ -0.16
CLRN1P58418 GPER1-207ENST00000619052 571 ntTSL 2 BASIC14.03□□□□□ -0.16
CLRN1P58418 AC139530.3-201ENST00000620344 690 ntBASIC14.03□□□□□ -0.16
CLRN1P58418 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CLRN1P58418 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN1P58418 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN1P58418 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN1P58418 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN1P58418 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CLRN1P58418 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN1P58418 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN1P58418 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN1P58418 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC14.03□□□□□ -0.16
CLRN1P58418 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.03□□□□□ -0.16
CLRN1P58418 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN1P58418 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN1P58418 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN1P58418 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN1P58418 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC14.03□□□□□ -0.16
CLRN1P58418 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN1P58418 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN1P58418 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLRN1P58418 AP002414.2-201ENST00000591780 3365 ntBASIC14.03□□□□□ -0.16
CLRN1P58418 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC14.03□□□□□ -0.16
CLRN1P58418 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CLRN1P58418 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
CLRN1P58418 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLRN1P58418 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLRN1P58418 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.02□□□□□ -0.16
CLRN1P58418 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.02□□□□□ -0.16
CLRN1P58418 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC14.02□□□□□ -0.16
CLRN1P58418 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC14.02□□□□□ -0.16
CLRN1P58418 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.16
CLRN1P58418 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CLRN1P58418 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC14.02□□□□□ -0.16
CLRN1P58418 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.02□□□□□ -0.16
CLRN1P58418 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLRN1P58418 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CLRN1P58418 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CLRN1P58418 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLRN1P58418 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.02□□□□□ -0.16
CLRN1P58418 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN1P58418 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN1P58418 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN1P58418 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
CLRN1P58418 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN1P58418 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN1P58418 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC14.02□□□□□ -0.17
CLRN1P58418 AC107890.1-201ENST00000422478 521 ntBASIC14.02□□□□□ -0.17
CLRN1P58418 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC14.02□□□□□ -0.17
CLRN1P58418 URGCP-206ENST00000446958 365 ntTSL 2 BASIC14.02□□□□□ -0.17
CLRN1P58418 HLA-V-204ENST00000476601 1289 ntBASIC14.02□□□□□ -0.17
CLRN1P58418 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN1P58418 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC14.02□□□□□ -0.17
CLRN1P58418 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
CLRN1P58418 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC14.02□□□□□ -0.17
CLRN1P58418 SPDYE12P-201ENST00000618416 771 ntBASIC14.02□□□□□ -0.17
CLRN1P58418 AC093028.1-201ENST00000622998 982 ntBASIC14.02□□□□□ -0.17
CLRN1P58418 AC073592.8-201ENST00000624126 511 ntBASIC14.02□□□□□ -0.17
CLRN1P58418 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN1P58418 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
CLRN1P58418 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
CLRN1P58418 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
CLRN1P58418 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN1P58418 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN1P58418 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN1P58418 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CLRN1P58418 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN1P58418 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLRN1P58418 BANP-201ENST00000286122 2368 ntTSL 5 BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms