Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TNFP01375 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC15.23■□□□□ 0.03
TNFP01375 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC15.23■□□□□ 0.03
TNFP01375 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
TNFP01375 AC025181.2-201ENST00000606994 802 ntBASIC15.23■□□□□ 0.03
TNFP01375 GPR39-203ENST00000622084 900 ntTSL 5 BASIC15.23■□□□□ 0.03
TNFP01375 BX539320.1-201ENST00000623759 877 ntBASIC15.23■□□□□ 0.03
TNFP01375 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TNFP01375 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.23■□□□□ 0.03
TNFP01375 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TNFP01375 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
TNFP01375 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
TNFP01375 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TNFP01375 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
TNFP01375 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TNFP01375 AC084018.2-201ENST00000613093 2607 ntBASIC15.23■□□□□ 0.03
TNFP01375 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TNFP01375 SUPT20HL2-201ENST00000486479 2409 ntBASIC15.23■□□□□ 0.03
TNFP01375 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TNFP01375 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TNFP01375 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TNFP01375 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TNFP01375 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TNFP01375 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TNFP01375 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TNFP01375 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TNFP01375 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
TNFP01375 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TNFP01375 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC15.22■□□□□ 0.03
TNFP01375 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TNFP01375 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TNFP01375 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
TNFP01375 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TNFP01375 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TNFP01375 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC15.22■□□□□ 0.03
TNFP01375 AC092933.1-201ENST00000393644 945 ntBASIC15.22■□□□□ 0.03
TNFP01375 MPV17-208ENST00000405076 603 ntTSL 5 BASIC15.22■□□□□ 0.03
TNFP01375 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC15.22■□□□□ 0.03
TNFP01375 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC15.22■□□□□ 0.03
TNFP01375 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
TNFP01375 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC15.22■□□□□ 0.03
TNFP01375 FTH1P14-201ENST00000482930 551 ntBASIC15.22■□□□□ 0.03
TNFP01375 AC022137.2-201ENST00000503482 481 ntBASIC15.22■□□□□ 0.03
TNFP01375 KRT18P25-201ENST00000508931 1278 ntBASIC15.22■□□□□ 0.03
TNFP01375 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC15.22■□□□□ 0.03
TNFP01375 AP005019.2-201ENST00000615104 511 ntBASIC15.22■□□□□ 0.03
TNFP01375 WNT11-204ENST00000621122 789 ntTSL 5 BASIC15.22■□□□□ 0.03
TNFP01375 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TNFP01375 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
TNFP01375 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
TNFP01375 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TNFP01375 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TNFP01375 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TNFP01375 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TNFP01375 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.22■□□□□ 0.03
TNFP01375 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
TNFP01375 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
TNFP01375 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TNFP01375 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.21■□□□□ 0.03
TNFP01375 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TNFP01375 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
TNFP01375 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TNFP01375 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TNFP01375 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TNFP01375 MSTO2P-201ENST00000314835 1709 ntBASIC15.21■□□□□ 0.03
TNFP01375 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC15.21■□□□□ 0.03
TNFP01375 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.21■□□□□ 0.03
TNFP01375 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TNFP01375 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
TNFP01375 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC15.21■□□□□ 0.03
TNFP01375 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TNFP01375 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TNFP01375 ANKRD19P-201ENST00000338192 862 ntBASIC15.21■□□□□ 0.03
TNFP01375 GZMB-202ENST00000382540 816 ntTSL 5 BASIC15.21■□□□□ 0.03
TNFP01375 STX1A-203ENST00000395155 783 ntTSL 2 BASIC15.21■□□□□ 0.03
TNFP01375 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC15.21■□□□□ 0.03
TNFP01375 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC15.21■□□□□ 0.03
TNFP01375 C2orf27AP3-201ENST00000434123 579 ntBASIC15.21■□□□□ 0.03
TNFP01375 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC15.21■□□□□ 0.03
TNFP01375 RPL7P3-201ENST00000441388 714 ntBASIC15.21■□□□□ 0.03
TNFP01375 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC15.21■□□□□ 0.03
TNFP01375 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC15.21■□□□□ 0.03
TNFP01375 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC15.21■□□□□ 0.03
TNFP01375 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC15.21■□□□□ 0.03
TNFP01375 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TNFP01375 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC15.21■□□□□ 0.03
TNFP01375 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC15.21■□□□□ 0.03
TNFP01375 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC15.21■□□□□ 0.03
TNFP01375 AL354718.3-201ENST00000616414 581 ntBASIC15.21■□□□□ 0.03
TNFP01375 CR382287.1-201ENST00000623954 586 ntBASIC15.21■□□□□ 0.03
TNFP01375 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC15.21■□□□□ 0.03
TNFP01375 SERF2-217ENST00000630046 862 ntTSL 5 BASIC15.21■□□□□ 0.03
TNFP01375 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TNFP01375 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
TNFP01375 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC15.21■□□□□ 0.03
TNFP01375 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
TNFP01375 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TNFP01375 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
TNFP01375 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
TNFP01375 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.21■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms