Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC17.48■□□□□ 0.39
MSH4O15457 API5-202ENST00000420461 2009 ntTSL 2 BASIC17.48■□□□□ 0.39
MSH4O15457 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.48■□□□□ 0.39
MSH4O15457 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSH4O15457 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
MSH4O15457 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
MSH4O15457 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC17.48■□□□□ 0.39
MSH4O15457 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC17.48■□□□□ 0.39
MSH4O15457 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
MSH4O15457 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC17.48■□□□□ 0.39
MSH4O15457 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
MSH4O15457 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
MSH4O15457 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
MSH4O15457 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
MSH4O15457 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSH4O15457 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSH4O15457 HYMAI-201ENST00000635591 3347 ntBASIC17.47■□□□□ 0.39
MSH4O15457 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSH4O15457 RPL5P21-201ENST00000404620 815 ntBASIC17.47■□□□□ 0.39
MSH4O15457 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC17.47■□□□□ 0.39
MSH4O15457 TMEM14DP-201ENST00000422205 345 ntBASIC17.47■□□□□ 0.39
MSH4O15457 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
MSH4O15457 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC17.47■□□□□ 0.39
MSH4O15457 KRT17P7-201ENST00000451704 1104 ntBASIC17.47■□□□□ 0.39
MSH4O15457 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC17.47■□□□□ 0.39
MSH4O15457 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC17.47■□□□□ 0.39
MSH4O15457 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSH4O15457 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
MSH4O15457 NEU3-203ENST00000529024 581 ntTSL 3 BASIC17.47■□□□□ 0.39
MSH4O15457 ENPP7P5-201ENST00000541031 1031 ntBASIC17.47■□□□□ 0.39
MSH4O15457 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC17.47■□□□□ 0.39
MSH4O15457 AC005252.2-201ENST00000624630 1141 ntBASIC17.47■□□□□ 0.39
MSH4O15457 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC17.47■□□□□ 0.39
MSH4O15457 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
MSH4O15457 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSH4O15457 AL138799.1-201ENST00000448213 1675 ntBASIC17.47■□□□□ 0.39
MSH4O15457 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
MSH4O15457 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
MSH4O15457 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
MSH4O15457 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
MSH4O15457 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSH4O15457 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSH4O15457 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
MSH4O15457 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
MSH4O15457 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC17.47■□□□□ 0.39
MSH4O15457 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
MSH4O15457 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
MSH4O15457 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC17.47■□□□□ 0.39
MSH4O15457 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
MSH4O15457 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC17.47■□□□□ 0.39
MSH4O15457 STK24-203ENST00000397517 4578 ntTSL 2 BASIC17.47■□□□□ 0.39
MSH4O15457 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
MSH4O15457 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSH4O15457 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
MSH4O15457 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSH4O15457 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSH4O15457 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSH4O15457 AC112693.3-201ENST00000624819 1983 ntBASIC17.46■□□□□ 0.39
MSH4O15457 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
MSH4O15457 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
MSH4O15457 USE1-206ENST00000595101 1776 ntTSL 2 BASIC17.46■□□□□ 0.39
MSH4O15457 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSH4O15457 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC17.46■□□□□ 0.39
MSH4O15457 AGER-206ENST00000375070 1463 ntTSL 5 BASIC17.46■□□□□ 0.39
MSH4O15457 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
MSH4O15457 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
MSH4O15457 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSH4O15457 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSH4O15457 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC17.46■□□□□ 0.39
MSH4O15457 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
MSH4O15457 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
MSH4O15457 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
MSH4O15457 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
MSH4O15457 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC17.46■□□□□ 0.39
MSH4O15457 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC17.46■□□□□ 0.39
MSH4O15457 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC17.46■□□□□ 0.39
MSH4O15457 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC17.46■□□□□ 0.39
MSH4O15457 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC17.46■□□□□ 0.39
MSH4O15457 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC17.46■□□□□ 0.39
MSH4O15457 GIMAP3P-201ENST00000495150 836 ntBASIC17.46■□□□□ 0.39
MSH4O15457 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
MSH4O15457 FUZ-207ENST00000526575 482 ntTSL 4 BASIC17.46■□□□□ 0.39
MSH4O15457 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC17.46■□□□□ 0.39
MSH4O15457 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC17.46■□□□□ 0.39
MSH4O15457 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC17.46■□□□□ 0.39
MSH4O15457 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSH4O15457 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSH4O15457 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSH4O15457 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC17.46■□□□□ 0.39
MSH4O15457 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSH4O15457 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
MSH4O15457 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
MSH4O15457 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSH4O15457 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
MSH4O15457 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
MSH4O15457 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC17.46■□□□□ 0.39
MSH4O15457 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.38
MSH4O15457 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.38
MSH4O15457 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
MSH4O15457 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms