Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 AC009477.1-201ENST00000452936 217 ntBASIC16.77■□□□□ 0.28
SIX2Q9NPC8 AC067863.1-201ENST00000494933 530 ntBASIC16.77■□□□□ 0.28
SIX2Q9NPC8 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 AP000845.1-201ENST00000581677 2131 ntBASIC16.77■□□□□ 0.28
SIX2Q9NPC8 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 AC025181.2-201ENST00000606994 802 ntBASIC16.77■□□□□ 0.28
SIX2Q9NPC8 RAB34-223ENST00000636154 730 ntTSL 2 BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC16.77■□□□□ 0.27
SIX2Q9NPC8 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SIX2Q9NPC8 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.27
SIX2Q9NPC8 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SIX2Q9NPC8 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.77■□□□□ 0.27
SIX2Q9NPC8 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 KRT18P28-201ENST00000453838 1332 ntBASIC16.76■□□□□ 0.27
SIX2Q9NPC8 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.76■□□□□ 0.27
SIX2Q9NPC8 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 LBH-203ENST00000404397 543 ntTSL 4 BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 METTL21AP1-201ENST00000438852 635 ntBASIC16.76■□□□□ 0.27
SIX2Q9NPC8 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 AC009407.1-201ENST00000568958 598 ntBASIC16.76■□□□□ 0.27
SIX2Q9NPC8 AC004461.2-201ENST00000629517 803 ntBASIC16.76■□□□□ 0.27
SIX2Q9NPC8 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SIX2Q9NPC8 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 PCDHGB8P-201ENST00000502926 1973 ntBASIC16.75■□□□□ 0.27
SIX2Q9NPC8 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 AL513477.1-201ENST00000602865 2407 ntBASIC16.75■□□□□ 0.27
SIX2Q9NPC8 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 AC104457.1-201ENST00000401024 814 ntBASIC16.75■□□□□ 0.27
SIX2Q9NPC8 MIR943-201ENST00000401286 94 ntBASIC16.75■□□□□ 0.27
SIX2Q9NPC8 AC114501.2-201ENST00000439631 535 ntBASIC16.75■□□□□ 0.27
SIX2Q9NPC8 FAM86GP-201ENST00000448322 971 ntBASIC16.75■□□□□ 0.27
SIX2Q9NPC8 KRT18P43-201ENST00000469825 1281 ntBASIC16.75■□□□□ 0.27
SIX2Q9NPC8 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 LINC01101-201ENST00000622953 1884 ntBASIC16.75■□□□□ 0.27
SIX2Q9NPC8 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms