Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIG3P49916 CICP20-201ENST00000443330 2801 ntBASIC16.6■□□□□ 0.25
LIG3P49916 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC16.59■□□□□ 0.25
LIG3P49916 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC16.59■□□□□ 0.25
LIG3P49916 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC16.59■□□□□ 0.25
LIG3P49916 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC16.59■□□□□ 0.25
LIG3P49916 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
LIG3P49916 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.59■□□□□ 0.25
LIG3P49916 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 AL139400.1-201ENST00000366220 510 ntBASIC16.59■□□□□ 0.25
LIG3P49916 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.59■□□□□ 0.25
LIG3P49916 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 KRT18P34-201ENST00000488218 1270 ntBASIC16.59■□□□□ 0.25
LIG3P49916 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.59■□□□□ 0.25
LIG3P49916 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.59■□□□□ 0.25
LIG3P49916 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.59■□□□□ 0.25
LIG3P49916 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
LIG3P49916 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC16.59■□□□□ 0.25
LIG3P49916 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.59■□□□□ 0.25
LIG3P49916 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.59■□□□□ 0.25
LIG3P49916 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.59■□□□□ 0.25
LIG3P49916 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
LIG3P49916 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC16.59■□□□□ 0.25
LIG3P49916 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC16.59■□□□□ 0.25
LIG3P49916 AC006449.6-201ENST00000612330 2296 ntBASIC16.59■□□□□ 0.25
LIG3P49916 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC16.59■□□□□ 0.25
LIG3P49916 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
LIG3P49916 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC16.59■□□□□ 0.25
LIG3P49916 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.59■□□□□ 0.25
LIG3P49916 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
LIG3P49916 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LIG3P49916 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
LIG3P49916 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
LIG3P49916 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
LIG3P49916 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
LIG3P49916 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC16.58■□□□□ 0.25
LIG3P49916 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
LIG3P49916 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIG3P49916 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LIG3P49916 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIG3P49916 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIG3P49916 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
LIG3P49916 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.58■□□□□ 0.24
LIG3P49916 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.58■□□□□ 0.24
LIG3P49916 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
LIG3P49916 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.58■□□□□ 0.24
LIG3P49916 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.58■□□□□ 0.24
LIG3P49916 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LIG3P49916 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC16.58■□□□□ 0.24
LIG3P49916 KRT8P23-201ENST00000560090 1207 ntBASIC16.58■□□□□ 0.24
LIG3P49916 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.58■□□□□ 0.24
LIG3P49916 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LIG3P49916 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LIG3P49916 AC027307.2-201ENST00000591252 911 ntBASIC16.58■□□□□ 0.24
LIG3P49916 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIG3P49916 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.58■□□□□ 0.24
LIG3P49916 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.58■□□□□ 0.24
LIG3P49916 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
LIG3P49916 UXT-AS1-201ENST00000590504 1525 ntBASIC16.58■□□□□ 0.24
LIG3P49916 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.58■□□□□ 0.24
LIG3P49916 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LIG3P49916 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LIG3P49916 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIG3P49916 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.58■□□□□ 0.24
LIG3P49916 AL512652.2-201ENST00000625156 1716 ntBASIC16.58■□□□□ 0.24
LIG3P49916 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIG3P49916 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.24
LIG3P49916 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LIG3P49916 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC16.58■□□□□ 0.24
LIG3P49916 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
LIG3P49916 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LIG3P49916 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.24
LIG3P49916 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIG3P49916 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIG3P49916 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIG3P49916 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms