Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTCFP49711 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTCFP49711 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC18.03■□□□□ 0.48
CTCFP49711 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTCFP49711 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC18.03■□□□□ 0.48
CTCFP49711 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CTCFP49711 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC18.03■□□□□ 0.48
CTCFP49711 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTCFP49711 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTCFP49711 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC18.03■□□□□ 0.48
CTCFP49711 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CTCFP49711 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
CTCFP49711 SLC25A1P3-201ENST00000395415 828 ntBASIC18.03■□□□□ 0.48
CTCFP49711 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTCFP49711 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC18.03■□□□□ 0.48
CTCFP49711 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC18.03■□□□□ 0.48
CTCFP49711 AC079112.1-201ENST00000454972 939 ntBASIC18.03■□□□□ 0.48
CTCFP49711 PFN2-206ENST00000461930 606 ntTSL 4 BASIC18.03■□□□□ 0.48
CTCFP49711 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CTCFP49711 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC18.03■□□□□ 0.48
CTCFP49711 RTN3P1-201ENST00000536295 711 ntBASIC18.03■□□□□ 0.48
CTCFP49711 AC005730.2-201ENST00000564549 1184 ntBASIC18.03■□□□□ 0.48
CTCFP49711 MIR4321-201ENST00000592276 80 ntBASIC18.03■□□□□ 0.48
CTCFP49711 AC018695.6-201ENST00000614011 534 ntBASIC18.03■□□□□ 0.48
CTCFP49711 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC18.03■□□□□ 0.48
CTCFP49711 ETV2-207ENST00000619399 994 ntTSL 5 BASIC18.03■□□□□ 0.48
CTCFP49711 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTCFP49711 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTCFP49711 DRD5P1-201ENST00000456605 1438 ntBASIC18.03■□□□□ 0.48
CTCFP49711 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTCFP49711 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CTCFP49711 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC18.03■□□□□ 0.48
CTCFP49711 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.03■□□□□ 0.48
CTCFP49711 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTCFP49711 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC18.03■□□□□ 0.48
CTCFP49711 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTCFP49711 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CTCFP49711 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CTCFP49711 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTCFP49711 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC18.02■□□□□ 0.48
CTCFP49711 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTCFP49711 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CTCFP49711 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTCFP49711 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTCFP49711 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTCFP49711 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CTCFP49711 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CTCFP49711 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CTCFP49711 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTCFP49711 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTCFP49711 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC18.02■□□□□ 0.48
CTCFP49711 DPM3-202ENST00000368399 517 ntBASIC18.02■□□□□ 0.48
CTCFP49711 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CTCFP49711 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CTCFP49711 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTCFP49711 AC004987.2-201ENST00000395959 1148 ntBASIC18.02■□□□□ 0.48
CTCFP49711 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC18.02■□□□□ 0.48
CTCFP49711 SLED1-202ENST00000512051 380 ntBASIC18.02■□□□□ 0.48
CTCFP49711 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CTCFP49711 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC18.02■□□□□ 0.48
CTCFP49711 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC18.02■□□□□ 0.48
CTCFP49711 AC013355.1-201ENST00000562625 723 ntBASIC18.02■□□□□ 0.48
CTCFP49711 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC18.02■□□□□ 0.48
CTCFP49711 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC18.02■□□□□ 0.48
CTCFP49711 SYT17-208ENST00000568433 812 ntTSL 3 BASIC18.02■□□□□ 0.48
CTCFP49711 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC18.02■□□□□ 0.48
CTCFP49711 AC000095.1-201ENST00000603208 874 ntBASIC18.02■□□□□ 0.48
CTCFP49711 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC18.02■□□□□ 0.48
CTCFP49711 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CTCFP49711 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CTCFP49711 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.02■□□□□ 0.47
CTCFP49711 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
CTCFP49711 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
CTCFP49711 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC18.02■□□□□ 0.47
CTCFP49711 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.47
CTCFP49711 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC18.02■□□□□ 0.47
CTCFP49711 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CTCFP49711 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CTCFP49711 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CTCFP49711 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC18.02■□□□□ 0.47
CTCFP49711 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CTCFP49711 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CTCFP49711 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CTCFP49711 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CTCFP49711 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CTCFP49711 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC18.01■□□□□ 0.47
CTCFP49711 AL118508.1-201ENST00000613502 2345 ntBASIC18.01■□□□□ 0.47
CTCFP49711 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CTCFP49711 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTCFP49711 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTCFP49711 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC18.01■□□□□ 0.47
CTCFP49711 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CTCFP49711 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC18.01■□□□□ 0.47
CTCFP49711 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CTCFP49711 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CTCFP49711 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CTCFP49711 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTCFP49711 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTCFP49711 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CTCFP49711 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms