Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AC024909.3-201ENST00000611513 2257 ntBASIC18.38■□□□□ 0.53
HLA-DOAP06340 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC18.38■□□□□ 0.53
HLA-DOAP06340 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DOAP06340 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DOAP06340 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DOAP06340 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DOAP06340 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC18.38■□□□□ 0.53
HLA-DOAP06340 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
HLA-DOAP06340 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DOAP06340 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
HLA-DOAP06340 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
HLA-DOAP06340 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DOAP06340 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DOAP06340 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
HLA-DOAP06340 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DOAP06340 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DOAP06340 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DOAP06340 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DOAP06340 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.37■□□□□ 0.53
HLA-DOAP06340 ZBTB12BP-201ENST00000314232 1122 ntBASIC18.37■□□□□ 0.53
HLA-DOAP06340 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
HLA-DOAP06340 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DOAP06340 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC18.37■□□□□ 0.53
HLA-DOAP06340 CSF2RBP1-201ENST00000447905 391 ntBASIC18.37■□□□□ 0.53
HLA-DOAP06340 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DOAP06340 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC18.37■□□□□ 0.53
HLA-DOAP06340 AC079316.1-201ENST00000548397 411 ntBASIC18.37■□□□□ 0.53
HLA-DOAP06340 KRT90P-201ENST00000549264 1064 ntBASIC18.37■□□□□ 0.53
HLA-DOAP06340 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DOAP06340 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC18.37■□□□□ 0.53
HLA-DOAP06340 AC244669.2-201ENST00000612320 853 ntBASIC18.37■□□□□ 0.53
HLA-DOAP06340 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DOAP06340 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DOAP06340 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
HLA-DOAP06340 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DOAP06340 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DOAP06340 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC18.37■□□□□ 0.53
HLA-DOAP06340 AP003680.1-201ENST00000598970 3660 ntBASIC18.37■□□□□ 0.53
HLA-DOAP06340 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DOAP06340 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DOAP06340 ILF3-AS1-201ENST00000591501 1983 ntBASIC18.37■□□□□ 0.53
HLA-DOAP06340 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DOAP06340 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DOAP06340 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC18.37■□□□□ 0.53
HLA-DOAP06340 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HLA-DOAP06340 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HLA-DOAP06340 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
HLA-DOAP06340 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
HLA-DOAP06340 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
HLA-DOAP06340 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HLA-DOAP06340 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
HLA-DOAP06340 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HLA-DOAP06340 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HLA-DOAP06340 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HLA-DOAP06340 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HLA-DOAP06340 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
HLA-DOAP06340 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
HLA-DOAP06340 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
HLA-DOAP06340 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC18.36■□□□□ 0.53
HLA-DOAP06340 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
HLA-DOAP06340 FAM21FP-201ENST00000426241 1131 ntBASIC18.36■□□□□ 0.53
HLA-DOAP06340 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC18.36■□□□□ 0.53
HLA-DOAP06340 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC18.36■□□□□ 0.53
HLA-DOAP06340 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC18.36■□□□□ 0.53
HLA-DOAP06340 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC18.36■□□□□ 0.53
HLA-DOAP06340 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC18.36■□□□□ 0.53
HLA-DOAP06340 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
HLA-DOAP06340 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
HLA-DOAP06340 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
HLA-DOAP06340 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC18.36■□□□□ 0.53
HLA-DOAP06340 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC18.36■□□□□ 0.53
HLA-DOAP06340 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HLA-DOAP06340 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC18.36■□□□□ 0.53
HLA-DOAP06340 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HLA-DOAP06340 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HLA-DOAP06340 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HLA-DOAP06340 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
HLA-DOAP06340 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HLA-DOAP06340 SUPT20HL2-201ENST00000486479 2409 ntBASIC18.35■□□□□ 0.53
HLA-DOAP06340 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC18.35■□□□□ 0.53
HLA-DOAP06340 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HLA-DOAP06340 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
HLA-DOAP06340 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HLA-DOAP06340 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
HLA-DOAP06340 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HLA-DOAP06340 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HLA-DOAP06340 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HLA-DOAP06340 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
HLA-DOAP06340 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HLA-DOAP06340 REXO1L6P-201ENST00000603433 1515 ntBASIC18.35■□□□□ 0.53
HLA-DOAP06340 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HLA-DOAP06340 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC18.35■□□□□ 0.53
HLA-DOAP06340 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HLA-DOAP06340 KRT8P35-201ENST00000483942 1338 ntBASIC18.35■□□□□ 0.53
HLA-DOAP06340 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HLA-DOAP06340 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
HLA-DOAP06340 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HLA-DOAP06340 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HLA-DOAP06340 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HLA-DOAP06340 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms