Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 FAM90A2P-201ENST00000511144 1395 ntBASIC6.81□□□□□ -1.32
USH2AO75445 FAM90A25P-201ENST00000528404 1395 ntBASIC6.81□□□□□ -1.32
USH2AO75445 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
USH2AO75445 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
USH2AO75445 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC6.81□□□□□ -1.32
USH2AO75445 MBLAC2-202ENST00000514906 1936 ntBASIC6.81□□□□□ -1.32
USH2AO75445 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC6.81□□□□□ -1.32
USH2AO75445 PLA2G2A-201ENST00000375111 970 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
USH2AO75445 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC6.81□□□□□ -1.32
USH2AO75445 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC6.81□□□□□ -1.32
USH2AO75445 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC6.81□□□□□ -1.32
USH2AO75445 KLF2P1-201ENST00000447438 1042 ntBASIC6.81□□□□□ -1.32
USH2AO75445 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
USH2AO75445 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC6.81□□□□□ -1.32
USH2AO75445 PGAM1P12-201ENST00000505622 748 ntBASIC6.81□□□□□ -1.32
USH2AO75445 AC093826.1-201ENST00000508655 993 ntBASIC6.81□□□□□ -1.32
USH2AO75445 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC6.81□□□□□ -1.32
USH2AO75445 AC124947.2-201ENST00000547118 1133 ntBASIC6.81□□□□□ -1.32
USH2AO75445 MIR4313-201ENST00000580760 101 ntBASIC6.81□□□□□ -1.32
USH2AO75445 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC6.81□□□□□ -1.32
USH2AO75445 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC6.81□□□□□ -1.32
USH2AO75445 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC6.81□□□□□ -1.32
USH2AO75445 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC6.81□□□□□ -1.32
USH2AO75445 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC6.8□□□□□ -1.32
USH2AO75445 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC6.8□□□□□ -1.32
USH2AO75445 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC6.8□□□□□ -1.32
USH2AO75445 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 RPS5-204ENST00000598098 536 ntTSL 2 BASIC6.8□□□□□ -1.32
USH2AO75445 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC6.8□□□□□ -1.32
USH2AO75445 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC6.8□□□□□ -1.32
USH2AO75445 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 AL158070.2-201ENST00000623713 1621 ntBASIC6.8□□□□□ -1.32
USH2AO75445 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC6.8□□□□□ -1.32
USH2AO75445 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC6.8□□□□□ -1.32
USH2AO75445 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 VDAC1P1-201ENST00000439229 848 ntBASIC6.8□□□□□ -1.32
USH2AO75445 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 DUX4L46-201ENST00000566845 751 ntBASIC6.8□□□□□ -1.32
USH2AO75445 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC6.8□□□□□ -1.32
USH2AO75445 AC110057.1-201ENST00000636031 898 ntBASIC6.8□□□□□ -1.32
USH2AO75445 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC6.8□□□□□ -1.32
USH2AO75445 PGR-209ENST00000617858 2816 ntTSL 5 BASIC6.8□□□□□ -1.32
USH2AO75445 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
USH2AO75445 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC6.8□□□□□ -1.32
USH2AO75445 AC092364.2-201ENST00000596710 2692 ntBASIC6.8□□□□□ -1.32
USH2AO75445 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC6.8□□□□□ -1.32
USH2AO75445 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC6.8□□□□□ -1.32
USH2AO75445 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC6.8□□□□□ -1.32
USH2AO75445 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC6.8□□□□□ -1.32
USH2AO75445 STK16-203ENST00000409516 895 ntTSL 2 BASIC6.8□□□□□ -1.32
USH2AO75445 BCAS2P2-201ENST00000425064 674 ntBASIC6.8□□□□□ -1.32
USH2AO75445 TSPY25P-201ENST00000429463 745 ntBASIC6.8□□□□□ -1.32
USH2AO75445 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC6.8□□□□□ -1.32
USH2AO75445 AC063952.3-201ENST00000467756 308 ntBASIC6.8□□□□□ -1.32
USH2AO75445 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC6.8□□□□□ -1.32
USH2AO75445 TREHP1-201ENST00000531328 465 ntBASIC6.8□□□□□ -1.32
USH2AO75445 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC6.8□□□□□ -1.32
USH2AO75445 HMGB1P24-201ENST00000611897 328 ntBASIC6.8□□□□□ -1.32
USH2AO75445 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
USH2AO75445 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC6.8□□□□□ -1.32
USH2AO75445 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC6.8□□□□□ -1.32
USH2AO75445 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC6.8□□□□□ -1.32
USH2AO75445 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC6.8□□□□□ -1.32
USH2AO75445 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC6.8□□□□□ -1.32
USH2AO75445 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 AC016396.2-201ENST00000562575 1417 ntBASIC6.8□□□□□ -1.32
USH2AO75445 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC6.8□□□□□ -1.32
USH2AO75445 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC6.8□□□□□ -1.32
USH2AO75445 SNRPF-205ENST00000553192 552 ntTSL 4 BASIC6.8□□□□□ -1.32
USH2AO75445 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC6.8□□□□□ -1.32
USH2AO75445 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC6.8□□□□□ -1.32
USH2AO75445 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC6.8□□□□□ -1.32
USH2AO75445 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC6.8□□□□□ -1.32
USH2AO75445 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC6.79□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms