Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 RNA5SP486-201ENST00000515961 83 ntBASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 FOS-206ENST00000555347 1280 ntTSL 2 BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 AP006547.1-201ENST00000563435 692 ntBASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 EEF1DP1-201ENST00000585891 896 ntBASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 AC005695.3-201ENST00000614522 232 ntBASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 AC015818.8-201ENST00000587907 1519 ntBASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 MTX1P1-201ENST00000440904 838 ntBASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 HOMER2P2-201ENST00000451621 847 ntBASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 BX284668.4-201ENST00000453917 508 ntBASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 AC020914.3-201ENST00000594712 304 ntBASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 KC6-205ENST00000599934 556 ntTSL 4 BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 AC145423.3-201ENST00000615987 467 ntBASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 AC006453.4-201ENST00000636949 1252 ntBASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 AL138709.1-201ENST00000614840 1693 ntBASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.03■□□□□ -0
PCDHGA1Q9Y5H4 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 HARS-202ENST00000415192 1401 ntTSL 2 BASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 KRT8P35-201ENST00000483942 1338 ntBASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 CSH2-202ENST00000345366 598 ntTSL 5 BASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 RERG-205ENST00000537647 935 ntTSL 2 BASIC15.02■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms