Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 STRN-202ENST00000379213 2254 ntTSL 5 BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 LST1-205ENST00000376089 680 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 LST1-206ENST00000376090 689 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 LST1-208ENST00000376093 648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 LST1-209ENST00000376096 565 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 LST1-210ENST00000376099 610 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 LST1-212ENST00000396101 459 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 SOCS2P1-201ENST00000417727 557 ntBASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 LST1-214ENST00000418507 726 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 AC005034.1-201ENST00000426657 489 ntBASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 LST1-217ENST00000438075 764 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 MBP-202ENST00000355994 2772 ntTSL 5 BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 EDF1-203ENST00000371649 790 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 NME2-201ENST00000393183 568 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 ENPP7P5-201ENST00000541031 1031 ntBASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 IFT20-206ENST00000578122 834 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 IFT20-208ENST00000578985 831 ntTSL 3 BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 AC022532.1-201ENST00000624563 1728 ntBASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM35Q9UPQ4 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 MST1L-201ENST00000442552 2185 ntBASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 AL162726.2-201ENST00000438986 1017 ntBASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 MIR5189-201ENST00000577370 114 ntBASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms