Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 PP14571-201ENST00000404327 934 ntTSL 2 BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 HTR5BP-201ENST00000430851 1154 ntBASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 IGHV3-62-201ENST00000520057 340 ntBASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 AC243562.1-201ENST00000560672 389 ntBASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 UCKL1-AS1-201ENST00000623569 3602 ntBASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 AC008677.1-201ENST00000519230 1561 ntBASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 COCH-203ENST00000460581 2688 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 CBR1-202ENST00000399191 838 ntTSL 3 BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 DNAJB3-201ENST00000446806 729 ntBASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 OR2I1P-209ENST00000641730 5365 ntBASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 GPI-205ENST00000586425 1799 ntTSL 5 BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC39Q9UFE4 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 PARN-202ENST00000420015 2360 ntTSL 2 BASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 AP000347.1-202ENST00000435868 847 ntBASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 TIMM8BP1-201ENST00000452384 211 ntBASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 AC079140.1-201ENST00000508039 487 ntBASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 KRT8P48-201ENST00000515599 1220 ntBASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 RNF34-208ENST00000555076 593 ntTSL 3 BASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 KRT8P23-201ENST00000560090 1207 ntBASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC39Q9UFE4 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms