Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 VILL-207ENST00000465644 1857 ntTSL 5 BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRAIPQ9BWF2 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 AC011477.6-201ENST00000604980 1927 ntBASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 KRT18P64-201ENST00000434946 1219 ntBASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 AL162726.2-201ENST00000438986 1017 ntBASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 AC000095.1-201ENST00000603208 874 ntBASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 ABBA01031660.1-201ENST00000635219 756 ntBASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
TRAIPQ9BWF2 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 ENPP7P5-201ENST00000541031 1031 ntBASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 AC008735.3-201ENST00000596646 500 ntBASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 AC010319.3-201ENST00000597028 470 ntBASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 AC133539.2-201ENST00000604757 467 ntBASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 MIR6805-201ENST00000615055 62 ntBASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAIPQ9BWF2 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAIPQ9BWF2 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms