Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.18
SKA3Q8IX90 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC13.95□□□□□ -0.18
SKA3Q8IX90 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
SKA3Q8IX90 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC13.95□□□□□ -0.18
SKA3Q8IX90 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
SKA3Q8IX90 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC13.95□□□□□ -0.18
SKA3Q8IX90 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
SKA3Q8IX90 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
SKA3Q8IX90 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC13.95□□□□□ -0.18
SKA3Q8IX90 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC13.95□□□□□ -0.18
SKA3Q8IX90 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
SKA3Q8IX90 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC13.95□□□□□ -0.18
SKA3Q8IX90 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC13.95□□□□□ -0.18
SKA3Q8IX90 RFPL4AP1-201ENST00000530883 850 ntBASIC13.95□□□□□ -0.18
SKA3Q8IX90 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC13.95□□□□□ -0.18
SKA3Q8IX90 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
SKA3Q8IX90 MIR4313-201ENST00000580760 101 ntBASIC13.95□□□□□ -0.18
SKA3Q8IX90 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC13.95□□□□□ -0.18
SKA3Q8IX90 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC13.95□□□□□ -0.18
SKA3Q8IX90 AL158211.3-201ENST00000607385 239 ntBASIC13.95□□□□□ -0.18
SKA3Q8IX90 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
SKA3Q8IX90 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC13.95□□□□□ -0.18
SKA3Q8IX90 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC13.95□□□□□ -0.18
SKA3Q8IX90 FLII-221ENST00000578558 2377 ntTSL 5 BASIC13.95□□□□□ -0.18
SKA3Q8IX90 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
SKA3Q8IX90 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SKA3Q8IX90 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC13.95□□□□□ -0.18
SKA3Q8IX90 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC13.95□□□□□ -0.18
SKA3Q8IX90 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC13.94□□□□□ -0.18
SKA3Q8IX90 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SKA3Q8IX90 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
SKA3Q8IX90 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SKA3Q8IX90 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SKA3Q8IX90 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SKA3Q8IX90 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
SKA3Q8IX90 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SKA3Q8IX90 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SKA3Q8IX90 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
SKA3Q8IX90 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
SKA3Q8IX90 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SKA3Q8IX90 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SKA3Q8IX90 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
SKA3Q8IX90 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 PTK7-212ENST00000476760 902 ntTSL 2 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 IGHV3-42-201ENST00000520410 361 ntBASIC13.94□□□□□ -0.18
SKA3Q8IX90 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SKA3Q8IX90 MIR6069-201ENST00000620069 79 ntBASIC13.94□□□□□ -0.18
SKA3Q8IX90 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 AL033527.5-202ENST00000641632 1098 ntBASIC13.94□□□□□ -0.18
SKA3Q8IX90 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC13.94□□□□□ -0.18
SKA3Q8IX90 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC13.94□□□□□ -0.18
SKA3Q8IX90 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms