Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 AC020914.3-201ENST00000594712 304 ntBASIC17.71■□□□□ 0.43
CCNA1P78396 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC17.71■□□□□ 0.43
CCNA1P78396 ECM1P1-201ENST00000604092 1279 ntBASIC17.71■□□□□ 0.43
CCNA1P78396 AC025181.2-201ENST00000606994 802 ntBASIC17.71■□□□□ 0.43
CCNA1P78396 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC17.71■□□□□ 0.43
CCNA1P78396 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCNA1P78396 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.71■□□□□ 0.43
CCNA1P78396 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCNA1P78396 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCNA1P78396 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCNA1P78396 LRRC59-203ENST00000576448 1531 ntBASIC17.71■□□□□ 0.43
CCNA1P78396 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCNA1P78396 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCNA1P78396 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCNA1P78396 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCNA1P78396 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCNA1P78396 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCNA1P78396 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.71■□□□□ 0.42
CCNA1P78396 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CCNA1P78396 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
CCNA1P78396 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCNA1P78396 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC17.7■□□□□ 0.42
CCNA1P78396 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC17.7■□□□□ 0.42
CCNA1P78396 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CCNA1P78396 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
CCNA1P78396 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCNA1P78396 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CCNA1P78396 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCNA1P78396 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC17.7■□□□□ 0.42
CCNA1P78396 KRTAP10-13P-201ENST00000412914 571 ntBASIC17.7■□□□□ 0.42
CCNA1P78396 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC17.7■□□□□ 0.42
CCNA1P78396 PTPA-218ENST00000435132 618 ntTSL 2 BASIC17.7■□□□□ 0.42
CCNA1P78396 IGHJ2P-201ENST00000454480 60 ntBASIC17.7■□□□□ 0.42
CCNA1P78396 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC17.7■□□□□ 0.42
CCNA1P78396 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC17.7■□□□□ 0.42
CCNA1P78396 INO80C-210ENST00000590757 595 ntTSL 2 BASIC17.7■□□□□ 0.42
CCNA1P78396 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCNA1P78396 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC17.7■□□□□ 0.42
CCNA1P78396 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC17.7■□□□□ 0.42
CCNA1P78396 AC106872.11-201ENST00000605838 421 ntBASIC17.7■□□□□ 0.42
CCNA1P78396 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCNA1P78396 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
CCNA1P78396 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCNA1P78396 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CCNA1P78396 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC17.7■□□□□ 0.42
CCNA1P78396 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCNA1P78396 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCNA1P78396 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CCNA1P78396 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCNA1P78396 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCNA1P78396 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.7■□□□□ 0.42
CCNA1P78396 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.69■□□□□ 0.42
CCNA1P78396 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCNA1P78396 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCNA1P78396 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCNA1P78396 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CCNA1P78396 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCNA1P78396 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCNA1P78396 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CCNA1P78396 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC17.69■□□□□ 0.42
CCNA1P78396 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC17.69■□□□□ 0.42
CCNA1P78396 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CCNA1P78396 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CCNA1P78396 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCNA1P78396 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC17.69■□□□□ 0.42
CCNA1P78396 CSH2-202ENST00000345366 598 ntTSL 5 BASIC17.69■□□□□ 0.42
CCNA1P78396 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCNA1P78396 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCNA1P78396 B9D1-203ENST00000395615 805 ntTSL 3 BASIC17.69■□□□□ 0.42
CCNA1P78396 AL645937.2-201ENST00000396808 931 ntBASIC17.69■□□□□ 0.42
CCNA1P78396 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC17.69■□□□□ 0.42
CCNA1P78396 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC17.69■□□□□ 0.42
CCNA1P78396 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC17.69■□□□□ 0.42
CCNA1P78396 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC17.69■□□□□ 0.42
CCNA1P78396 RHOQP1-201ENST00000555758 579 ntBASIC17.69■□□□□ 0.42
CCNA1P78396 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCNA1P78396 KC6-205ENST00000599934 556 ntTSL 4 BASIC17.69■□□□□ 0.42
CCNA1P78396 DIO1-215ENST00000610607 796 ntTSL 5 BASIC17.69■□□□□ 0.42
CCNA1P78396 PRSS30P-206ENST00000641773 873 ntBASIC17.69■□□□□ 0.42
CCNA1P78396 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CCNA1P78396 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCNA1P78396 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCNA1P78396 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCNA1P78396 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCNA1P78396 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCNA1P78396 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCNA1P78396 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCNA1P78396 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCNA1P78396 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCNA1P78396 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCNA1P78396 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCNA1P78396 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCNA1P78396 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
CCNA1P78396 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.68■□□□□ 0.42
CCNA1P78396 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCNA1P78396 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC17.68■□□□□ 0.42
CCNA1P78396 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCNA1P78396 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC17.68■□□□□ 0.42
CCNA1P78396 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCNA1P78396 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms