Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
PKNOX1P55347 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PKNOX1P55347 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC15.47■□□□□ 0.07
PKNOX1P55347 AC112693.3-201ENST00000624819 1983 ntBASIC15.47■□□□□ 0.07
PKNOX1P55347 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC15.47■□□□□ 0.07
PKNOX1P55347 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PKNOX1P55347 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PKNOX1P55347 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
PKNOX1P55347 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
PKNOX1P55347 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.47■□□□□ 0.07
PKNOX1P55347 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PKNOX1P55347 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.47■□□□□ 0.07
PKNOX1P55347 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
PKNOX1P55347 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PKNOX1P55347 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.47■□□□□ 0.07
PKNOX1P55347 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PKNOX1P55347 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PKNOX1P55347 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
PKNOX1P55347 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PKNOX1P55347 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PKNOX1P55347 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC15.47■□□□□ 0.07
PKNOX1P55347 SPDYE11-202ENST00000450699 704 ntBASIC15.47■□□□□ 0.07
PKNOX1P55347 CCDC74BP1-201ENST00000508880 1123 ntBASIC15.47■□□□□ 0.07
PKNOX1P55347 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
PKNOX1P55347 RNF34-208ENST00000555076 593 ntTSL 3 BASIC15.47■□□□□ 0.07
PKNOX1P55347 SPDYE9P-201ENST00000570642 692 ntBASIC15.47■□□□□ 0.07
PKNOX1P55347 AL450472.2-201ENST00000603663 1156 ntBASIC15.47■□□□□ 0.07
PKNOX1P55347 AC026979.3-201ENST00000607315 403 ntBASIC15.47■□□□□ 0.07
PKNOX1P55347 AC026120.1-201ENST00000611536 926 ntBASIC15.47■□□□□ 0.07
PKNOX1P55347 SPDYE10P-202ENST00000612005 668 ntBASIC15.47■□□□□ 0.07
PKNOX1P55347 SPDYE8P-202ENST00000612377 668 ntBASIC15.47■□□□□ 0.07
PKNOX1P55347 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
PKNOX1P55347 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PKNOX1P55347 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PKNOX1P55347 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.47■□□□□ 0.07
PKNOX1P55347 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PKNOX1P55347 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PKNOX1P55347 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
PKNOX1P55347 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC15.47■□□□□ 0.07
PKNOX1P55347 C18orf15-201ENST00000623680 2534 ntBASIC15.47■□□□□ 0.07
PKNOX1P55347 AC005089.1-201ENST00000619486 2241 ntBASIC15.47■□□□□ 0.07
PKNOX1P55347 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PKNOX1P55347 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PKNOX1P55347 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
PKNOX1P55347 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
PKNOX1P55347 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PKNOX1P55347 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PKNOX1P55347 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PKNOX1P55347 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.46■□□□□ 0.07
PKNOX1P55347 AL136982.4-201ENST00000437689 1740 ntBASIC15.46■□□□□ 0.07
PKNOX1P55347 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
PKNOX1P55347 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC15.46■□□□□ 0.07
PKNOX1P55347 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PKNOX1P55347 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.46■□□□□ 0.07
PKNOX1P55347 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
PKNOX1P55347 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PKNOX1P55347 KRT8P37-201ENST00000451609 1420 ntBASIC15.46■□□□□ 0.07
PKNOX1P55347 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PKNOX1P55347 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.46■□□□□ 0.07
PKNOX1P55347 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
PKNOX1P55347 TEX30-205ENST00000376029 959 ntTSL 2 BASIC15.46■□□□□ 0.07
PKNOX1P55347 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PKNOX1P55347 SPCS2P4-201ENST00000436160 681 ntBASIC15.46■□□□□ 0.07
PKNOX1P55347 EEF1DP4-201ENST00000446006 880 ntBASIC15.46■□□□□ 0.07
PKNOX1P55347 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.07
PKNOX1P55347 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC15.46■□□□□ 0.07
PKNOX1P55347 LINC01225-203ENST00000563550 1244 ntBASIC15.46■□□□□ 0.07
PKNOX1P55347 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.46■□□□□ 0.07
PKNOX1P55347 SSH2-211ENST00000590153 570 ntTSL 4 BASIC15.46■□□□□ 0.07
PKNOX1P55347 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PKNOX1P55347 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.46■□□□□ 0.07
PKNOX1P55347 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC15.46■□□□□ 0.07
PKNOX1P55347 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PKNOX1P55347 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
PKNOX1P55347 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PKNOX1P55347 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.46■□□□□ 0.07
PKNOX1P55347 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PKNOX1P55347 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC15.46■□□□□ 0.07
PKNOX1P55347 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC15.46■□□□□ 0.07
PKNOX1P55347 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.46■□□□□ 0.07
PKNOX1P55347 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
PKNOX1P55347 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.46■□□□□ 0.07
PKNOX1P55347 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PKNOX1P55347 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
PKNOX1P55347 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC15.46■□□□□ 0.06
PKNOX1P55347 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.46■□□□□ 0.06
PKNOX1P55347 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.46■□□□□ 0.06
PKNOX1P55347 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC15.46■□□□□ 0.06
PKNOX1P55347 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
PKNOX1P55347 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
PKNOX1P55347 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
PKNOX1P55347 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC15.46■□□□□ 0.06
PKNOX1P55347 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC15.45■□□□□ 0.06
PKNOX1P55347 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PKNOX1P55347 MIR600HG-201ENST00000449175 5984 ntBASIC15.45■□□□□ 0.06
PKNOX1P55347 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PKNOX1P55347 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
PKNOX1P55347 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PKNOX1P55347 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC15.45■□□□□ 0.06
PKNOX1P55347 LINC00552-201ENST00000625151 2579 ntBASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms