Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RFX3P48380 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC14.85□□□□□ -0.03
RFX3P48380 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RFX3P48380 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RFX3P48380 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
RFX3P48380 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RFX3P48380 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFX3P48380 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFX3P48380 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC14.84□□□□□ -0.03
RFX3P48380 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RFX3P48380 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
RFX3P48380 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
RFX3P48380 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
RFX3P48380 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFX3P48380 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RFX3P48380 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.84□□□□□ -0.03
RFX3P48380 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14.84□□□□□ -0.03
RFX3P48380 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFX3P48380 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFX3P48380 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
RFX3P48380 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC14.84□□□□□ -0.03
RFX3P48380 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFX3P48380 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC14.84□□□□□ -0.03
RFX3P48380 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC14.84□□□□□ -0.03
RFX3P48380 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC14.84□□□□□ -0.03
RFX3P48380 SPDYE7P-202ENST00000420373 878 ntBASIC14.84□□□□□ -0.03
RFX3P48380 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFX3P48380 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC14.84□□□□□ -0.03
RFX3P48380 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC14.84□□□□□ -0.03
RFX3P48380 AC109322.1-201ENST00000524499 1264 ntBASIC14.84□□□□□ -0.03
RFX3P48380 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC14.84□□□□□ -0.03
RFX3P48380 AC105021.1-202ENST00000570572 669 ntBASIC14.84□□□□□ -0.03
RFX3P48380 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC14.84□□□□□ -0.03
RFX3P48380 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC14.84□□□□□ -0.03
RFX3P48380 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC14.84□□□□□ -0.03
RFX3P48380 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RFX3P48380 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.84□□□□□ -0.03
RFX3P48380 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFX3P48380 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.84□□□□□ -0.03
RFX3P48380 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC14.84□□□□□ -0.03
RFX3P48380 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
RFX3P48380 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC14.84□□□□□ -0.03
RFX3P48380 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC14.84□□□□□ -0.03
RFX3P48380 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC14.84□□□□□ -0.03
RFX3P48380 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFX3P48380 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFX3P48380 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RFX3P48380 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFX3P48380 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFX3P48380 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFX3P48380 LRRFIP1P1-201ENST00000498774 2246 ntBASIC14.84□□□□□ -0.03
RFX3P48380 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RFX3P48380 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC14.84□□□□□ -0.03
RFX3P48380 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC14.83□□□□□ -0.03
RFX3P48380 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC14.83□□□□□ -0.03
RFX3P48380 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
RFX3P48380 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.03
RFX3P48380 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
RFX3P48380 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
RFX3P48380 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
RFX3P48380 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC14.83□□□□□ -0.03
RFX3P48380 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
RFX3P48380 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
RFX3P48380 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
RFX3P48380 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
RFX3P48380 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
RFX3P48380 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
RFX3P48380 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
RFX3P48380 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
RFX3P48380 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
RFX3P48380 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
RFX3P48380 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
RFX3P48380 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14.83□□□□□ -0.04
RFX3P48380 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC14.83□□□□□ -0.04
RFX3P48380 ELP6-209ENST00000446787 894 ntTSL 3 BASIC14.83□□□□□ -0.04
RFX3P48380 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC14.83□□□□□ -0.04
RFX3P48380 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
RFX3P48380 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
RFX3P48380 VPS29-207ENST00000549970 818 ntTSL 3 BASIC14.83□□□□□ -0.04
RFX3P48380 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
RFX3P48380 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
RFX3P48380 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
RFX3P48380 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
RFX3P48380 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
RFX3P48380 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
RFX3P48380 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
RFX3P48380 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14.83□□□□□ -0.04
RFX3P48380 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC14.83□□□□□ -0.04
RFX3P48380 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
RFX3P48380 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
RFX3P48380 HLA-DQB2-231ENST00000435145 2026 ntBASIC14.83□□□□□ -0.04
RFX3P48380 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC14.83□□□□□ -0.04
RFX3P48380 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC14.83□□□□□ -0.04
RFX3P48380 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC14.83□□□□□ -0.04
RFX3P48380 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
RFX3P48380 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
RFX3P48380 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
RFX3P48380 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
RFX3P48380 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC14.82□□□□□ -0.04
RFX3P48380 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms