Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
BRCA1P38398 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.52■□□□□ 0.56
BRCA1P38398 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
BRCA1P38398 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
BRCA1P38398 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
BRCA1P38398 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.52■□□□□ 0.56
BRCA1P38398 AC018695.7-201ENST00000624587 2492 ntBASIC18.52■□□□□ 0.55
BRCA1P38398 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
BRCA1P38398 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC18.52■□□□□ 0.55
BRCA1P38398 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC18.52■□□□□ 0.55
BRCA1P38398 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC18.52■□□□□ 0.55
BRCA1P38398 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC18.52■□□□□ 0.55
BRCA1P38398 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
BRCA1P38398 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC18.52■□□□□ 0.55
BRCA1P38398 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
BRCA1P38398 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
BRCA1P38398 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
BRCA1P38398 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
BRCA1P38398 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
BRCA1P38398 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC18.51■□□□□ 0.55
BRCA1P38398 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
BRCA1P38398 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
BRCA1P38398 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC18.51■□□□□ 0.55
BRCA1P38398 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC18.51■□□□□ 0.55
BRCA1P38398 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
BRCA1P38398 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
BRCA1P38398 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC18.51■□□□□ 0.55
BRCA1P38398 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC18.51■□□□□ 0.55
BRCA1P38398 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
BRCA1P38398 POLD4-208ENST00000532830 904 ntTSL 3 BASIC18.51■□□□□ 0.55
BRCA1P38398 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC18.51■□□□□ 0.55
BRCA1P38398 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
BRCA1P38398 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
BRCA1P38398 LINC01165-201ENST00000445190 1623 ntBASIC18.51■□□□□ 0.55
BRCA1P38398 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
BRCA1P38398 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
BRCA1P38398 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
BRCA1P38398 FRMPD2B-201ENST00000431305 1347 ntBASIC18.5■□□□□ 0.55
BRCA1P38398 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC18.5■□□□□ 0.55
BRCA1P38398 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
BRCA1P38398 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
BRCA1P38398 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
BRCA1P38398 AC239868.1-201ENST00000369385 493 ntBASIC18.5■□□□□ 0.55
BRCA1P38398 AL583805.1-201ENST00000391389 531 ntBASIC18.5■□□□□ 0.55
BRCA1P38398 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC18.5■□□□□ 0.55
BRCA1P38398 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC18.5■□□□□ 0.55
BRCA1P38398 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
BRCA1P38398 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC18.5■□□□□ 0.55
BRCA1P38398 FTH1P22-201ENST00000456305 520 ntBASIC18.5■□□□□ 0.55
BRCA1P38398 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
BRCA1P38398 POU5F1P2-201ENST00000521750 823 ntBASIC18.5■□□□□ 0.55
BRCA1P38398 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
BRCA1P38398 DNM1P51-201ENST00000558149 522 ntBASIC18.5■□□□□ 0.55
BRCA1P38398 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC18.5■□□□□ 0.55
BRCA1P38398 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC18.5■□□□□ 0.55
BRCA1P38398 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
BRCA1P38398 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
BRCA1P38398 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
BRCA1P38398 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
BRCA1P38398 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
BRCA1P38398 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
BRCA1P38398 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
BRCA1P38398 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
BRCA1P38398 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
BRCA1P38398 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC18.5■□□□□ 0.55
BRCA1P38398 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
BRCA1P38398 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
BRCA1P38398 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC18.5■□□□□ 0.55
BRCA1P38398 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
BRCA1P38398 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC18.5■□□□□ 0.55
BRCA1P38398 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
BRCA1P38398 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
BRCA1P38398 RPL8P2-201ENST00000430538 502 ntBASIC18.5■□□□□ 0.55
BRCA1P38398 LYPLA2P1-203ENST00000447689 696 ntBASIC18.5■□□□□ 0.55
BRCA1P38398 DUTP3-201ENST00000450025 415 ntBASIC18.5■□□□□ 0.55
BRCA1P38398 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC18.5■□□□□ 0.55
BRCA1P38398 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC18.5■□□□□ 0.55
BRCA1P38398 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC18.5■□□□□ 0.55
BRCA1P38398 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
BRCA1P38398 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
BRCA1P38398 AC138466.4-201ENST00000623965 852 ntBASIC18.5■□□□□ 0.55
BRCA1P38398 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BRCA1P38398 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
BRCA1P38398 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
BRCA1P38398 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BRCA1P38398 AC015909.3-201ENST00000572855 1794 ntBASIC18.49■□□□□ 0.55
BRCA1P38398 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BRCA1P38398 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BRCA1P38398 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BRCA1P38398 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
BRCA1P38398 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
BRCA1P38398 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
BRCA1P38398 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
BRCA1P38398 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BRCA1P38398 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BRCA1P38398 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
BRCA1P38398 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
BRCA1P38398 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BRCA1P38398 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC18.49■□□□□ 0.55
BRCA1P38398 AL157407.1-201ENST00000435784 904 ntBASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms