Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
HOXD3P31249 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HOXD3P31249 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC12.18□□□□□ -0.46
HOXD3P31249 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXD3P31249 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
HOXD3P31249 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC12.18□□□□□ -0.46
HOXD3P31249 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC12.18□□□□□ -0.46
HOXD3P31249 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXD3P31249 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXD3P31249 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HOXD3P31249 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HOXD3P31249 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXD3P31249 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXD3P31249 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXD3P31249 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXD3P31249 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXD3P31249 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXD3P31249 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXD3P31249 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC12.17□□□□□ -0.46
HOXD3P31249 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXD3P31249 BANP-204ENST00000393208 2283 ntTSL 2 BASIC12.17□□□□□ -0.46
HOXD3P31249 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXD3P31249 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HOXD3P31249 AL391005.1-201ENST00000623953 2435 ntBASIC12.17□□□□□ -0.46
HOXD3P31249 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXD3P31249 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC12.17□□□□□ -0.46
HOXD3P31249 AC010491.1-201ENST00000563101 2797 ntBASIC12.17□□□□□ -0.46
HOXD3P31249 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXD3P31249 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXD3P31249 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXD3P31249 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXD3P31249 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXD3P31249 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC12.17□□□□□ -0.46
HOXD3P31249 TMEM14DP-201ENST00000422205 345 ntBASIC12.17□□□□□ -0.46
HOXD3P31249 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC12.17□□□□□ -0.46
HOXD3P31249 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
HOXD3P31249 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXD3P31249 ELK1P1-201ENST00000485699 580 ntBASIC12.17□□□□□ -0.46
HOXD3P31249 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC12.17□□□□□ -0.46
HOXD3P31249 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC12.17□□□□□ -0.46
HOXD3P31249 HNRNPUP1-201ENST00000554987 333 ntBASIC12.17□□□□□ -0.46
HOXD3P31249 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC12.17□□□□□ -0.46
HOXD3P31249 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC12.17□□□□□ -0.46
HOXD3P31249 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
HOXD3P31249 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC12.17□□□□□ -0.46
HOXD3P31249 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC12.17□□□□□ -0.46
HOXD3P31249 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC12.17□□□□□ -0.46
HOXD3P31249 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC12.17□□□□□ -0.46
HOXD3P31249 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
HOXD3P31249 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXD3P31249 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
HOXD3P31249 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXD3P31249 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXD3P31249 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
HOXD3P31249 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXD3P31249 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXD3P31249 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HOXD3P31249 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXD3P31249 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC12.17□□□□□ -0.46
HOXD3P31249 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
HOXD3P31249 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC12.17□□□□□ -0.46
HOXD3P31249 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXD3P31249 AC046158.3-201ENST00000624947 2558 ntBASIC12.17□□□□□ -0.46
HOXD3P31249 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC12.17□□□□□ -0.46
HOXD3P31249 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXD3P31249 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC12.16□□□□□ -0.46
HOXD3P31249 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC12.16□□□□□ -0.46
HOXD3P31249 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXD3P31249 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
HOXD3P31249 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC12.16□□□□□ -0.46
HOXD3P31249 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXD3P31249 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXD3P31249 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HOXD3P31249 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXD3P31249 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC12.16□□□□□ -0.46
HOXD3P31249 AC067930.6-201ENST00000623257 4947 ntBASIC12.16□□□□□ -0.46
HOXD3P31249 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC12.16□□□□□ -0.46
HOXD3P31249 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC12.16□□□□□ -0.46
HOXD3P31249 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXD3P31249 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXD3P31249 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC12.16□□□□□ -0.46
HOXD3P31249 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HOXD3P31249 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC12.16□□□□□ -0.46
HOXD3P31249 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC12.16□□□□□ -0.46
HOXD3P31249 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXD3P31249 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXD3P31249 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXD3P31249 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HOXD3P31249 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HOXD3P31249 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
HOXD3P31249 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HOXD3P31249 AC136604.1-201ENST00000418535 575 ntBASIC12.16□□□□□ -0.46
HOXD3P31249 AC098850.1-201ENST00000419919 790 ntBASIC12.16□□□□□ -0.46
HOXD3P31249 MEP1AP4-201ENST00000423244 1087 ntBASIC12.16□□□□□ -0.46
HOXD3P31249 TARDBPP1-201ENST00000442013 1203 ntBASIC12.16□□□□□ -0.46
HOXD3P31249 NME4-207ENST00000450036 985 ntTSL 3 BASIC12.16□□□□□ -0.46
HOXD3P31249 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC12.16□□□□□ -0.46
HOXD3P31249 AC022494.1-201ENST00000466044 728 ntBASIC12.16□□□□□ -0.46
HOXD3P31249 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC12.16□□□□□ -0.46
HOXD3P31249 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC12.16□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms