Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TNFP01375 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TNFP01375 USE1-206ENST00000595101 1776 ntTSL 2 BASIC15.27■□□□□ 0.04
TNFP01375 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TNFP01375 ACKR1-201ENST00000368121 1240 ntBASIC15.27■□□□□ 0.04
TNFP01375 BRF1-202ENST00000379932 884 ntTSL 5 BASIC15.27■□□□□ 0.04
TNFP01375 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
TNFP01375 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC15.27■□□□□ 0.04
TNFP01375 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
TNFP01375 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TNFP01375 KLF2P4-201ENST00000451959 1225 ntBASIC15.27■□□□□ 0.04
TNFP01375 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
TNFP01375 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.27■□□□□ 0.04
TNFP01375 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC15.27■□□□□ 0.04
TNFP01375 AL603832.2-201ENST00000566195 2125 ntBASIC15.27■□□□□ 0.04
TNFP01375 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TNFP01375 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
TNFP01375 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TNFP01375 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.27■□□□□ 0.03
TNFP01375 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC15.27■□□□□ 0.03
TNFP01375 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TNFP01375 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TNFP01375 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TNFP01375 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
TNFP01375 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC15.27■□□□□ 0.03
TNFP01375 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
TNFP01375 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
TNFP01375 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
TNFP01375 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
TNFP01375 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.27■□□□□ 0.03
TNFP01375 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC15.27■□□□□ 0.03
TNFP01375 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TNFP01375 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TNFP01375 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.27■□□□□ 0.03
TNFP01375 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TNFP01375 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TNFP01375 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC15.26■□□□□ 0.03
TNFP01375 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC15.26■□□□□ 0.03
TNFP01375 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TNFP01375 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
TNFP01375 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
TNFP01375 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC15.26■□□□□ 0.03
TNFP01375 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TNFP01375 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
TNFP01375 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TNFP01375 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
TNFP01375 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
TNFP01375 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TNFP01375 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TNFP01375 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
TNFP01375 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TNFP01375 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TNFP01375 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
TNFP01375 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TNFP01375 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC15.26■□□□□ 0.03
TNFP01375 AC012441.1-201ENST00000446669 685 ntBASIC15.26■□□□□ 0.03
TNFP01375 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC15.26■□□□□ 0.03
TNFP01375 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC15.26■□□□□ 0.03
TNFP01375 SNX29P1-201ENST00000548357 1007 ntBASIC15.26■□□□□ 0.03
TNFP01375 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC15.26■□□□□ 0.03
TNFP01375 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.26■□□□□ 0.03
TNFP01375 ATF5-205ENST00000600336 682 ntTSL 2 BASIC15.26■□□□□ 0.03
TNFP01375 RPS24-214ENST00000613865 538 ntTSL 5 BASIC15.26■□□□□ 0.03
TNFP01375 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC15.26■□□□□ 0.03
TNFP01375 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.26■□□□□ 0.03
TNFP01375 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TNFP01375 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TNFP01375 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
TNFP01375 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.26■□□□□ 0.03
TNFP01375 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TNFP01375 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
TNFP01375 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TNFP01375 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TNFP01375 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
TNFP01375 AGER-206ENST00000375070 1463 ntTSL 5 BASIC15.26■□□□□ 0.03
TNFP01375 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TNFP01375 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TNFP01375 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TNFP01375 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
TNFP01375 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TNFP01375 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TNFP01375 TP73-213ENST00000604479 1623 ntTSL 5 BASIC15.25■□□□□ 0.03
TNFP01375 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TNFP01375 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.25■□□□□ 0.03
TNFP01375 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC15.25■□□□□ 0.03
TNFP01375 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
TNFP01375 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
TNFP01375 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TNFP01375 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TNFP01375 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
TNFP01375 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC15.25■□□□□ 0.03
TNFP01375 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC15.25■□□□□ 0.03
TNFP01375 CTBP2P5-201ENST00000454986 1264 ntBASIC15.25■□□□□ 0.03
TNFP01375 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TNFP01375 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TNFP01375 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC15.25■□□□□ 0.03
TNFP01375 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
TNFP01375 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC15.25■□□□□ 0.03
TNFP01375 MIR4259-201ENST00000584466 101 ntBASIC15.25■□□□□ 0.03
TNFP01375 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms