Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 AC006335.1-201ENST00000445200 547 ntBASIC15.57■□□□□ 0.08
PDGFBP01127 PPOX-204ENST00000462866 473 ntTSL 5 BASIC15.57■□□□□ 0.08
PDGFBP01127 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC15.57■□□□□ 0.08
PDGFBP01127 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC15.57■□□□□ 0.08
PDGFBP01127 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC15.57■□□□□ 0.08
PDGFBP01127 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PDGFBP01127 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PDGFBP01127 SYT17-208ENST00000568433 812 ntTSL 3 BASIC15.57■□□□□ 0.08
PDGFBP01127 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC15.57■□□□□ 0.08
PDGFBP01127 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PDGFBP01127 RN7SL163P-201ENST00000583100 276 ntBASIC15.57■□□□□ 0.08
PDGFBP01127 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC15.57■□□□□ 0.08
PDGFBP01127 MIR6842-201ENST00000612539 65 ntBASIC15.57■□□□□ 0.08
PDGFBP01127 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC15.57■□□□□ 0.08
PDGFBP01127 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PDGFBP01127 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC15.57■□□□□ 0.08
PDGFBP01127 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC15.57■□□□□ 0.08
PDGFBP01127 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PDGFBP01127 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.57■□□□□ 0.08
PDGFBP01127 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC15.57■□□□□ 0.08
PDGFBP01127 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PDGFBP01127 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
PDGFBP01127 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PDGFBP01127 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PDGFBP01127 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
PDGFBP01127 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
PDGFBP01127 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.56■□□□□ 0.08
PDGFBP01127 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
PDGFBP01127 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PDGFBP01127 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
PDGFBP01127 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
PDGFBP01127 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PDGFBP01127 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PDGFBP01127 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PDGFBP01127 POM121L8P-201ENST00000417732 1281 ntBASIC15.56■□□□□ 0.08
PDGFBP01127 POM121L9P-203ENST00000441984 1285 ntBASIC15.56■□□□□ 0.08
PDGFBP01127 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.56■□□□□ 0.08
PDGFBP01127 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC15.56■□□□□ 0.08
PDGFBP01127 MARK2P5-201ENST00000507649 634 ntBASIC15.56■□□□□ 0.08
PDGFBP01127 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC15.56■□□□□ 0.08
PDGFBP01127 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC15.56■□□□□ 0.08
PDGFBP01127 AC242376.1-201ENST00000559033 726 ntBASIC15.56■□□□□ 0.08
PDGFBP01127 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC15.56■□□□□ 0.08
PDGFBP01127 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC15.56■□□□□ 0.08
PDGFBP01127 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC15.56■□□□□ 0.08
PDGFBP01127 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC15.56■□□□□ 0.08
PDGFBP01127 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PDGFBP01127 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC15.56■□□□□ 0.08
PDGFBP01127 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
PDGFBP01127 YRDCP1-201ENST00000621419 643 ntBASIC15.56■□□□□ 0.08
PDGFBP01127 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
PDGFBP01127 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PDGFBP01127 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC15.56■□□□□ 0.08
PDGFBP01127 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PDGFBP01127 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PDGFBP01127 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
PDGFBP01127 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PDGFBP01127 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PDGFBP01127 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
PDGFBP01127 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PDGFBP01127 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
PDGFBP01127 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC15.56■□□□□ 0.08
PDGFBP01127 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC15.56■□□□□ 0.08
PDGFBP01127 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PDGFBP01127 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PDGFBP01127 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC15.55■□□□□ 0.08
PDGFBP01127 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC15.55■□□□□ 0.08
PDGFBP01127 AC018470.1-201ENST00000624790 3129 ntBASIC15.55■□□□□ 0.08
PDGFBP01127 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PDGFBP01127 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PDGFBP01127 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
PDGFBP01127 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.55■□□□□ 0.08
PDGFBP01127 BANP-227ENST00000626016 2144 ntTSL 2 BASIC15.55■□□□□ 0.08
PDGFBP01127 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PDGFBP01127 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
PDGFBP01127 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC15.55■□□□□ 0.08
PDGFBP01127 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC15.55■□□□□ 0.08
PDGFBP01127 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
PDGFBP01127 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PDGFBP01127 AC025271.4-201ENST00000621477 1726 ntBASIC15.55■□□□□ 0.08
PDGFBP01127 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC15.55■□□□□ 0.08
PDGFBP01127 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
PDGFBP01127 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
PDGFBP01127 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PDGFBP01127 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
PDGFBP01127 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PDGFBP01127 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PDGFBP01127 DNAJB1P1-201ENST00000429417 1024 ntBASIC15.55■□□□□ 0.08
PDGFBP01127 AL353637.1-201ENST00000451571 732 ntBASIC15.55■□□□□ 0.08
PDGFBP01127 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
PDGFBP01127 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC15.55■□□□□ 0.08
PDGFBP01127 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
PDGFBP01127 AC005357.2-202ENST00000590507 1060 ntBASIC15.55■□□□□ 0.08
PDGFBP01127 AC068587.8-201ENST00000641239 219 ntBASIC15.55■□□□□ 0.08
PDGFBP01127 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PDGFBP01127 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
PDGFBP01127 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PDGFBP01127 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC15.55■□□□□ 0.08
PDGFBP01127 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PDGFBP01127 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms