Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC013726.1-201ENST00000563747 2285 ntBASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC39Q9UFE4 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 AC024267.1-201ENST00000582320 895 ntBASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 AC005912.2-201ENST00000619492 2400 ntBASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 MARS-233ENST00000628866 2583 ntTSL 5 BASIC18.28■□□□□ 0.52
CCDC39Q9UFE4 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 LOX-206ENST00000639739 1626 ntTSL 5 BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 ADH5P3-201ENST00000433842 1137 ntBASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 GATB-205ENST00000508611 605 ntTSL 2 BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 NKG7-205ENST00000600427 520 ntTSL 3 BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 AL671883.3-201ENST00000603274 991 ntBASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC39Q9UFE4 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC18.27■□□□□ 0.51
CCDC39Q9UFE4 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC18.27■□□□□ 0.51
CCDC39Q9UFE4 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC39Q9UFE4 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC18.27■□□□□ 0.51
CCDC39Q9UFE4 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC39Q9UFE4 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC39Q9UFE4 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC18.27■□□□□ 0.51
CCDC39Q9UFE4 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC39Q9UFE4 GSN-215ENST00000545652 2428 ntTSL 2 BASIC18.27■□□□□ 0.51
CCDC39Q9UFE4 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
CCDC39Q9UFE4 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 GOLGA2P9-201ENST00000596977 1937 ntBASIC18.26■□□□□ 0.51
CCDC39Q9UFE4 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms